Vertex models: from cell mechanics to tissue morphogenesis

S Alt, P Ganguly, G Salbreux - … Transactions of the …, 2017 - royalsocietypublishing.org
Tissue morphogenesis requires the collective, coordinated motion and deformation of a
large number of cells. Vertex model simulations for tissue mechanics have been developed …

Vertex models of epithelial morphogenesis

AG Fletcher, M Osterfield, RE Baker, SY Shvartsman - Biophysical journal, 2014 - cell.com
The dynamic behavior of epithelial cell sheets plays a central role during numerous
developmental processes. Genetic and imaging studies of epithelial morphogenesis in a …

Active vertex model for cell-resolution description of epithelial tissue mechanics

DL Barton, S Henkes, CJ Weijer… - PLoS computational …, 2017 - journals.plos.org
We introduce an Active Vertex Model (AVM) for cell-resolution studies of the mechanics of
confluent epithelial tissues consisting of tens of thousands of cells, with a level of detail …

Patient-specific organoid and organ-on-a-chip: 3D cell-culture meets 3D printing and numerical simulation

F Zheng, Y **ao, H Liu, Y Fan, M Dao - Advanced biology, 2021 - pmc.ncbi.nlm.nih.gov
The last few decades have witnessed diversified in vitro models to recapitulate the
architecture and function of living organs or tissues and contribute immensely to advances in …

A geometrically controlled rigidity transition in a model for confluent 3D tissues

M Merkel, ML Manning - New Journal of Physics, 2018 - iopscience.iop.org
The origin of rigidity in disordered materials is an outstanding open problem in statistical
physics. Previously, a class of 2D cellular models has been shown to undergo a rigidity …

Strain-triggered mechanical feedback in self-organizing optic-cup morphogenesis

S Okuda, N Takata, Y Hasegawa, M Kawada… - Science …, 2018 - science.org
Organogenesis is a self-organizing process of multiple cells in three-dimensional (3D)
space, where macroscopic tissue deformations are robustly regulated by multicellular …

Combining Turing and 3D vertex models reproduces autonomous multicellular morphogenesis with undulation, tubulation, and branching

S Okuda, T Miura, Y Inoue, T Adachi, M Eiraku - Scientific reports, 2018 - nature.com
This study demonstrates computational simulations of multicellular deformation coupled with
chemical patterning in the three-dimensional (3D) space. To address these aspects, we …

TAG-1–assisted progenitor elongation streamlines nuclear migration to optimize subapical crowding

M Okamoto, T Namba, T Shinoda, T Kondo… - Nature …, 2013 - nature.com
Neural progenitors exhibit cell cycle–dependent interkinetic nuclear migration (INM) along
the apicobasal axis. Despite recent advances in understanding its underlying molecular …

Vertex dynamics simulations of viscosity-dependent deformation during tissue morphogenesis

S Okuda, Y Inoue, M Eiraku, T Adachi… - … and modeling in …, 2015 - Springer
In biological development, multiple cells cooperate to form tissue morphologies based on
their mechanical interactions; namely active force generation and passive viscoelastic …

The physics of organoids: a biophysical approach to understanding organogenesis

S Dahl-Jensen, A Grapin-Botton - Development, 2017 - journals.biologists.com
Organoids representing a diversity of tissues have recently been created, bridging the gap
between cell culture and experiments performed in vivo. Being small and amenable to …