[PDF][PDF] A threshold selection method from gray-level histograms

N Otsu - Automatica, 1975 - dspace.tul.cz
Summary 16S rRNA-targeted oligonucleotide probes for eubacteria (EUB338), ammonium-
oxidizing bacteria (Nsm156) and nitrite-oxidizing bacteria (Nb1000) were used for the rapid …

The uncultured microbial majority

MS Rappé, SJ Giovannoni - Annual Reviews in Microbiology, 2003 - annualreviews.org
▪ Abstract Since the delineation of 12 bacterial phyla by comparative phylogenetic analyses
of 16S ribosomal RNA in 1987 knowledge of microbial diversity has expanded dramatically …

Microbial diversity in the deep sea and the underexplored “rare biosphere”

ML Sogin, HG Morrison, JA Huber… - Proceedings of the …, 2006 - National Acad Sciences
The evolution of marine microbes over billions of years predicts that the composition of
microbial communities should be much greater than the published estimates of a few …

Community structure and metabolism through reconstruction of microbial genomes from the environment

GW Tyson, J Chapman, P Hugenholtz, EE Allen… - Nature, 2004 - nature.com
Microbial communities are vital in the functioning of all ecosystems; however, most
microorganisms are uncultivated, and their roles in natural systems are unclear. Here, using …

Large-scale forest girdling shows that current photosynthesis drives soil respiration

P Högberg, A Nordgren, N Buchmann, AFS Taylor… - Nature, 2001 - nature.com
The respiratory activities of plant roots, of their mycorrhizal fungi and of the free-living
microbial heterotrophs (decomposers) in soils are significant components of the global …

Microbial communities in acid mine drainage

BJ Baker, JF Banfield - FEMS microbiology ecology, 2003 - academic.oup.com
The dissolution of sulfide minerals such as pyrite (FeS2), arsenopyrite (FeAsS), chalcopyrite
(CuFeS2), sphalerite (ZnS), and marcasite (FeS2) yields hot, sulfuric acid-rich solutions that …

Metagenomics: genomic analysis of microbial communities

CS Riesenfeld, PD Schloss, J Handelsman - Annu. Rev. Genet., 2004 - annualreviews.org
▪ Abstract Uncultured microorganisms comprise the majority of the planet's biological
diversity. Microorganisms represent two of the three domains of life and contain vast …

Community genomics among stratified microbial assemblages in the ocean's interior

EF DeLong, CM Preston, T Mincer, V Rich, SJ Hallam… - Science, 2006 - science.org
Microbial life predominates in the ocean, yet little is known about its genomic variability,
especially along the depth continuum. We report here genomic analyses of planktonic …

Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota

V Iverson, RM Morris, CD Frazar, CT Berthiaume… - Science, 2012 - science.org
Ecosystems are shaped by complex communities of mostly unculturable microbes.
Metagenomes provide a fragmented view of such communities, but the ecosystem functions …

High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates

SA Connon, SJ Giovannoni - Applied and environmental …, 2002 - Am Soc Microbiol
Microbial diversity studies based on the cloning and sequencing of DNA from nature support
the conclusion that only a fraction of the microbial diversity is currently represented in culture …