Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science
Within clinical, biomedical, and translational science, an increasing number of projects are
adopting graphs for knowledge representation. Graph‐based data models elucidate the …
adopting graphs for knowledge representation. Graph‐based data models elucidate the …
GCN-MF: disease-gene association identification by graph convolutional networks and matrix factorization
Discovering disease-gene association is a fundamental and critical biomedical task, which
assists biologists and physicians to discover pathogenic mechanism of syndromes. With …
assists biologists and physicians to discover pathogenic mechanism of syndromes. With …
Broad-coverage biomedical relation extraction with SemRep
Background In the era of information overload, natural language processing (NLP)
techniques are increasingly needed to support advanced biomedical information …
techniques are increasingly needed to support advanced biomedical information …
[HTML][HTML] Recent advances in predicting gene–disease associations
K Opap, N Mulder - F1000Research, 2017 - ncbi.nlm.nih.gov
Deciphering gene–disease association is a crucial step in designing therapeutic strategies
against diseases. There are experimental methods for identifying gene–disease …
against diseases. There are experimental methods for identifying gene–disease …
Drug prioritization using the semantic properties of a knowledge graph
TB Malas, WJ Vlietstra, R Kudrin, S Starikov… - Scientific reports, 2019 - nature.com
Compounds that are candidates for drug repurposing can be ranked by leveraging
knowledge available in the biomedical literature and databases. This knowledge, spread …
knowledge available in the biomedical literature and databases. This knowledge, spread …
Fair digital twins for data-intensive research
Although all the technical components supporting fully orchestrated Digital Twins (DT)
currently exist, what remains missing is a conceptual clarification and analysis of a more …
currently exist, what remains missing is a conceptual clarification and analysis of a more …
VCP expression decrease as a biomarker of preclinical and early clinical stages of Parkinson's disease
A Alieva, M Rudenok, E Filatova, A Karabanov… - Scientific reports, 2020 - nature.com
Valosin-containing human protein (VCP) or p97 performs enzyme functions associated with
the maintenance of protein homeostasis and control of protein quality. Disruption of its …
the maintenance of protein homeostasis and control of protein quality. Disruption of its …
Expression analysis of genes involved in transport processes in mice with MPTP-induced model of Parkinson's disease
MM Rudenok, MI Shadrina, EV Filatova, IN Rybolovlev… - Life, 2022 - mdpi.com
Processes of intracellular and extracellular transport play one of the most important roles in
the functioning of cells. Changes to transport mechanisms in a neuron can lead to the …
the functioning of cells. Changes to transport mechanisms in a neuron can lead to the …
DisGeReExT: a knowledge discovery system for exploration of disease–gene associations through large-scale literature-wide analysis study
Objective Advanced experimental methods such as next-generation sequencing (NGS)
produced a large number of potential indicative genetic biomarkers and gene variants to …
produced a large number of potential indicative genetic biomarkers and gene variants to …
A collaborative filtering-based approach to biomedical knowledge discovery
Motivation The increase in publication rates makes it challenging for an individual
researcher to stay abreast of all relevant research in order to find novel research …
researcher to stay abreast of all relevant research in order to find novel research …