Evolution of gene duplication in plants

N Panchy, M Lehti-Shiu, SH Shiu - Plant physiology, 2016 - academic.oup.com
Ancient duplication events and a high rate of retention of extant pairs of duplicate genes
have contributed to an abundance of duplicate genes in plant genomes. These duplicates …

Abscisic acid: emergence of a core signaling network

SR Cutler, PL Rodriguez, RR Finkelstein… - Annual review of …, 2010 - annualreviews.org
Abscisic acid (ABA) regulates numerous developmental processes and adaptive stress
responses in plants. Many ABA signaling components have been identified, but their …

One thousand plant transcriptomes and the phylogenomics of green plants

Nature, 2019 - nature.com
Green plants (Viridiplantae) include around 450,000–500,000 species, of great diversity and
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …

Insights into land plant evolution garnered from the Marchantia polymorpha genome

JL Bowman, T Kohchi, KT Yamato, J Jenkins, S Shu… - Cell, 2017 - cell.com
The evolution of land flora transformed the terrestrial environment. Land plants evolved from
an ancestral charophycean alga from which they inherited developmental, biochemical, and …

Phytozome: a comparative platform for green plant genomics

DM Goodstein, S Shu, R Howson… - Nucleic acids …, 2012 - academic.oup.com
The number of sequenced plant genomes and associated genomic resources is growing
rapidly with the advent of both an increased focus on plant genomics from funding agencies …

LTR_retriever: a highly accurate and sensitive program for identification of long terminal repeat retrotransposons

S Ou, N Jiang - Plant physiology, 2018 - academic.oup.com
Long terminal repeat retrotransposons (LTR-RTs) are prevalent in plant genomes. The
identification of LTR-RTs is critical for achieving high-quality gene annotation. Based on the …

WRKY transcription factors

PJ Rushton, IE Somssich, P Ringler, QJ Shen - Trends in plant science, 2010 - cell.com
WRKY transcription factors are one of the largest families of transcriptional regulators in
plants and form integral parts of signalling webs that modulate many plant processes. Here …

Ancestral polyploidy in seed plants and angiosperms

Y Jiao, NJ Wickett, S Ayyampalayam, AS Chanderbali… - Nature, 2011 - nature.com
Abstract Whole-genome duplication (WGD), or polyploidy, followed by gene loss and
diploidization has long been recognized as an important evolutionary force in animals, fungi …

Ethylene signaling in plants

BM Binder - Journal of Biological Chemistry, 2020 - ASBMB
Ethylene is a gaseous phytohormone and the first of this hormone class to be discovered. It
is the simplest olefin gas and is biosynthesized by plants to regulate plant development …

Plant evolution driven by interactions with symbiotic and pathogenic microbes

PM Delaux, S Schornack - Science, 2021 - science.org
BACKGROUND Microbial interactions have shaped plant diversity in terrestrial ecosystems.
By forming mutually beneficial symbioses, microbes helped plants colonize land more than …