Nuclear hormone receptors and gene expression

A Aranda, A Pascual - Physiological reviews, 2001 - journals.physiology.org
The nuclear hormone receptor superfamily includes receptors for thyroid and steroid
hormones, retinoids and vitamin D, as well as different “orphan” receptors of unknown …

Cooperation between complexes that regulate chromatin structure and transcription

GJ Narlikar, HY Fan, RE Kingston - Cell, 2002 - cell.com
Chromatin structure creates barriers for each step in eukaryotic transcription. Here we
discuss how the activities of two major classes of chromatin-modifying complexes, ATP …

Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex

S Konermann, MD Brigham, AE Trevino, J Joung… - Nature, 2015 - nature.com
Systematic interrogation of gene function requires the ability to perturb gene expression in a
robust and generalizable manner. Here we describe structure-guided engineering of a …

Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4

LA Cirillo, FR Lin, I Cuesta, D Friedman, M Jarnik… - Molecular cell, 2002 - cell.com
The transcription factors HNF3 (FoxA) and GATA-4 are the earliest known to bind the
albumin gene enhancer in liver precursor cells in embryos. To understand how they access …

Post-translational modifications of histones that influence nucleosome dynamics

GD Bowman, MG Poirier - Chemical reviews, 2014 - ACS Publications
Nucleosomes are efficient DNA-packaging units. The fundamental protein unit of the
nucleosome is the histone dimer, a simple α-helical domain possessing a highly basic …

Role of SWI/SNF in acute leukemia maintenance and enhancer-mediated Myc regulation

J Shi, WA Whyte, CJ Zepeda-Mendoza… - Genes & …, 2013 - genesdev.cshlp.org
Cancer cells frequently depend on chromatin regulatory activities to maintain a malignant
phenotype. Here, we show that leukemia cells require the mammalian SWI/SNF chromatin …

ATP-dependent nucleosome remodeling

PB Becker, W Hörz - Annual review of biochemistry, 2002 - annualreviews.org
▪ Abstract It has been a long-standing challenge to decipher the principles that enable cells
to both organize their genomes into compact chromatin and ensure that the genetic …

ATP-dependent chromatin-remodeling complexes

M Vignali, AH Hassan, KE Neely… - Molecular and cellular …, 2000 - Am Soc Microbiol
The importance of histones and chromatin structure in the regulation of eukaryotic gene
transcription has become much more widely accepted over the past few years. It has been …

Compendium of human transcription factor effector domains

LF Soto, Z Li, CS Santoso, A Berenson, I Ho, VX Shen… - Molecular cell, 2022 - cell.com
Transcription factors (TFs) regulate gene expression by binding to DNA sequences and
modulating transcriptional activity through their effector domains. Despite the central role of …

Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes

AH Hassan, P Prochasson, KE Neely, SC Galasinski… - Cell, 2002 - cell.com
The functions of the SAGA and SWI/SNF complexes are interrelated and can form stable"
epigenetic marks" on promoters in vivo. Here we show that stable promoter occupancy by …