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Global emergence and dissemination of enterococci as nosocomial pathogens: attack of the clones?
Enterococci are Gram-positive bacteria that are found in plants, soil and as commensals of
the gastrointestinal tract of humans, mammals, and insects. Despite their commensal nature …
the gastrointestinal tract of humans, mammals, and insects. Despite their commensal nature …
Population genomics of bacterial host adaptation
Some bacteria can transfer to new host species, and this poses a risk to human health.
Indeed, an estimated 60% of all human pathogens have originated from other animal …
Indeed, an estimated 60% of all human pathogens have originated from other animal …
GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
Current methods struggle to reconstruct and visualize the genomic relationships of large
numbers of bacterial genomes. GrapeTree facilitates the analyses of large numbers of allelic …
numbers of bacterial genomes. GrapeTree facilitates the analyses of large numbers of allelic …
PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods
Abstract Summary High Throughput Sequencing provides a cost effective means of
generating high resolution data for hundreds or even thousands of strains, and is rapidly …
generating high resolution data for hundreds or even thousands of strains, and is rapidly …
BIGSdb: scalable analysis of bacterial genome variation at the population level
Background The opportunities for bacterial population genomics that are being realised by
the application of parallel nucleotide sequencing require novel bioinformatics platforms …
the application of parallel nucleotide sequencing require novel bioinformatics platforms …
Global phylogenetic analysis of Escherichia coli and plasmids carrying the mcr-1 gene indicates bacterial diversity but plasmid restriction
To understand the dynamics behind the worldwide spread of the mcr-1 gene, we determined
the population structure of Escherichia coli and of mobile genetic elements (MGEs) carrying …
the population structure of Escherichia coli and of mobile genetic elements (MGEs) carrying …
PHYLOViZ: phylogenetic inference and data visualization for sequence based ty** methods
Background With the decrease of DNA sequencing costs, sequence-based ty** methods
are rapidly becoming the gold standard for epidemiological surveillance. These methods …
are rapidly becoming the gold standard for epidemiological surveillance. These methods …
Toxoplasma gondii Genoty**: A Closer Look Into Europe
M Fernández-Escobar, G Schares… - Frontiers in cellular …, 2022 - frontiersin.org
Toxoplasma gondii is a major zoonotic agent which may cause harmful effects mainly in
pregnant and immunocompromised hosts. Despite many efforts on its genetic …
pregnant and immunocompromised hosts. Despite many efforts on its genetic …
Antimicrobial-resistant Neisseria gonorrhoeae in Europe in 2020 compared with in 2013 and 2018: a retrospective genomic surveillance study
Background Regular quality-assured whole-genome sequencing linked to antimicrobial
resistance (AMR) and patient metadata is imperative to elucidate the shifting gonorrhoea …
resistance (AMR) and patient metadata is imperative to elucidate the shifting gonorrhoea …
A Study on Prevalence and Characterization of Bacillus cereus in Ready-to-Eat Foods in China
S Yu, P Yu, J Wang, C Li, H Guo, C Liu… - Frontiers in …, 2020 - frontiersin.org
Bacillus cereus is widely distributed in different food products and can cause a variety of
symptoms associated with food poisoning. Since ready-to-eat (RTE) foods are not commonly …
symptoms associated with food poisoning. Since ready-to-eat (RTE) foods are not commonly …