Deep learning in protein structural modeling and design
Deep learning is catalyzing a scientific revolution fueled by big data, accessible toolkits, and
powerful computational resources, impacting many fields, including protein structural …
powerful computational resources, impacting many fields, including protein structural …
MatGPT: A vane of materials informatics from past, present, to future
Combining materials science, artificial intelligence (AI), physical chemistry, and other
disciplines, materials informatics is continuously accelerating the vigorous development of …
disciplines, materials informatics is continuously accelerating the vigorous development of …
DeePMD-kit v2: A software package for deep potential models
DeePMD-kit is a powerful open-source software package that facilitates molecular dynamics
simulations using machine learning potentials known as Deep Potential (DP) models. This …
simulations using machine learning potentials known as Deep Potential (DP) models. This …
Single-model uncertainty quantification in neural network potentials does not consistently outperform model ensembles
Neural networks (NNs) often assign high confidence to their predictions, even for points far
out of distribution, making uncertainty quantification (UQ) a challenge. When they are …
out of distribution, making uncertainty quantification (UQ) a challenge. When they are …
PW-SMD: A Plane-Wave Implicit Solvation Model Based on Electron Density for Surface Chemistry and Crystalline Systems in Aqueous Solution
Electron density-based implicit solvation models are a class of techniques for quantifying
solvation effects and calculating free energies of solvation without an explicit representation …
solvation effects and calculating free energies of solvation without an explicit representation …
Recent advances in quantum fragmentation approaches to complex molecular and condensed‐phase systems
J Liu, X He - Wiley Interdisciplinary Reviews: Computational …, 2023 - Wiley Online Library
Quantum mechanical (QM) calculations are critical in quantitatively understanding the
relationship between the structure and physicochemical properties of various chemical …
relationship between the structure and physicochemical properties of various chemical …
Machine learning accelerates quantum mechanics predictions of molecular crystals
Quantum mechanics (QM) approaches (DFT, MP2, CCSD (T), etc.) play an important role in
calculating molecules and crystals with a high accuracy and acceptable efficiency. In recent …
calculating molecules and crystals with a high accuracy and acceptable efficiency. In recent …
Machine learning-accelerated quantum mechanics-based atomistic simulations for industrial applications
Atomistic simulations have become an invaluable tool for industrial applications ranging
from the optimization of protein-ligand interactions for drug discovery to the design of new …
from the optimization of protein-ligand interactions for drug discovery to the design of new …
Ultra-fast and accurate binding energy prediction of shuttle effect-suppressive sulfur hosts for lithium-sulfur batteries using machine learning
The shuttle effect of lithium polysulfides (LiPS) leads to fast capacity loss in lithium-sulfur
batteries, which hinders the practical applications and makes the discovery of shuttle effect …
batteries, which hinders the practical applications and makes the discovery of shuttle effect …
Accelerated discovery of stable spinels in energy systems via machine learning
Discovery of new energy materials with thermal stability and special electro-optical
properties has always been the goal and challenge of material science. As an important …
properties has always been the goal and challenge of material science. As an important …