The SMAD2/3 interactome reveals that TGFβ controls m6A mRNA methylation in pluripotency
The TGFβ pathway has essential roles in embryonic development, organ homeostasis,
tissue repair and disease,. These diverse effects are mediated through the intracellular …
tissue repair and disease,. These diverse effects are mediated through the intracellular …
A Kelch13-defined endocytosis pathway mediates artemisinin resistance in malaria parasites
J Birnbaum, S Scharf, S Schmidt, E Jonscher… - Science, 2020 - science.org
Artemisinin and its derivatives (ARTs) are the frontline drugs against malaria, but resistance
is jeopardizing their effectiveness. ART resistance is mediated by mutations in the parasite's …
is jeopardizing their effectiveness. ART resistance is mediated by mutations in the parasite's …
RNA-centric methods: toward the interactome of specific RNA transcripts
RNA–protein interactions play an important role in numerous cellular processes in health
and disease. In recent years, the global RNA-bound proteome has been extensively studied …
and disease. In recent years, the global RNA-bound proteome has been extensively studied …
Chromatin accessibility-based characterization of the gene regulatory network underlying Plasmodium falciparum blood-stage development
CG Toenhake, SAK Fraschka, MS Vijayabaskar… - Cell host & …, 2018 - cell.com
Underlying the development of malaria parasites within erythrocytes and the resulting
pathogenicity is a hardwired program that secures proper timing of gene transcription and …
pathogenicity is a hardwired program that secures proper timing of gene transcription and …
Transcription factor proteomics—tools, applications, and challenges
J Simicevic, B Deplancke - Proteomics, 2017 - Wiley Online Library
Transcription factors (TFs) are a family of DNA‐binding proteins whose gene regulatory
capabilities are of vital importance in defining the molecular state of a cell. Despite their …
capabilities are of vital importance in defining the molecular state of a cell. Despite their …
Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria
Gene regulation is one of the most ubiquitous processes in biology. However, while the
catalog of bacterial genomes continues to expand rapidly, we remain ignorant about how …
catalog of bacterial genomes continues to expand rapidly, we remain ignorant about how …
The nucleosome landscape of Plasmodium falciparum reveals chromatin architecture and dynamics of regulatory sequences
PR Kensche, WAM Hoeijmakers… - Nucleic acids …, 2016 - academic.oup.com
In eukaryotes, the chromatin architecture has a pivotal role in regulating all DNA-associated
processes and it is central to the control of gene expression. For Plasmodium falciparum, a …
processes and it is central to the control of gene expression. For Plasmodium falciparum, a …
Gene-by-gene screen of the unknown proteins encoded on Plasmodium falciparum chromosome 3
J Kimmel, M Schmitt, A Sinner, PWTC Jansen… - Cell Systems, 2023 - cell.com
Taxon-specific proteins are key determinants defining the biology of all organisms and
represent prime drug targets in pathogens. However, lacking comparability with proteins in …
represent prime drug targets in pathogens. However, lacking comparability with proteins in …
Global profiling of protein–DNA and protein–nucleosome binding affinities using quantitative mass spectrometry
Interaction proteomics studies have provided fundamental insights into multimeric
biomolecular assemblies and cell-scale molecular networks. Significant recent …
biomolecular assemblies and cell-scale molecular networks. Significant recent …
Proteomics to study DNA-bound and chromatin-associated gene regulatory complexes
M Wierer, M Mann - Human molecular genetics, 2016 - academic.oup.com
High-resolution mass spectrometry (MS)-based proteomics is a powerful method for the
identification of soluble protein complexes and large-scale affinity purification screens can …
identification of soluble protein complexes and large-scale affinity purification screens can …