DNA hypermethylation in disease: mechanisms and clinical relevance

M Ehrlich - Epigenetics, 2019 - Taylor & Francis
Increasing numbers of studies implicate abnormal DNA methylation in cancer and many non-
malignant diseases. This is consistent with numerous findings about differentiation …

Stress-induced perinatal and transgenerational epigenetic programming of brain development and mental health

O Babenko, I Kovalchuk, GAS Metz - Neuroscience & Biobehavioral …, 2015 - Elsevier
Research efforts during the past decades have provided intriguing evidence suggesting that
stressful experiences during pregnancy exert long-term consequences on the future mental …

[HTML][HTML] Benchmarking of Nanopore R10. 4 and R9. 4.1 flow cells in single-cell whole-genome amplification and whole-genome shotgun sequencing

Y Ni, X Liu, ZM Simeneh, M Yang, R Li - Computational and Structural …, 2023 - Elsevier
Third-generation sequencing can be used in human cancer genomics and epigenomic
research. Oxford Nanopore Technologies (ONT) recently released R10. 4 flow cell, which …

Methyl-CpG-binding domain proteins: readers of the epigenome

Q Du, PL Luu, C Stirzaker, SJ Clark - Epigenomics, 2015 - Taylor & Francis
How DNA methylation is interpreted and influences genome regulation remains largely
unknown. Proteins of the methyl-CpG-binding domain (MBD) family are primary candidates …

A human tissue map of 5-hydroxymethylcytosines exhibits tissue specificity through gene and enhancer modulation

XL Cui, J Nie, J Ku, U Dougherty… - Nature …, 2020 - nature.com
Abstract DNA 5-hydroxymethylcytosine (5hmC) modification is known to be associated with
gene transcription and frequently used as a mark to investigate dynamic DNA methylation …

New insights into 5hmC DNA modification: generation, distribution and function

DQ Shi, I Ali, J Tang, WC Yang - Frontiers in genetics, 2017 - frontiersin.org
Dynamic DNA modifications, such as methylation/demethylation on cytosine, are major
epigenetic mechanisms to modulate gene expression in both eukaryotes and prokaryotes. In …

[HTML][HTML] MicroRNA-antagonism regulates breast cancer stemness and metastasis via TET-family-dependent chromatin remodeling

SJ Song, L Poliseno, MS Song, U Ala, K Webster, C Ng… - Cell, 2013 - cell.com
Tumor cells metastasize to distant organs through genetic and epigenetic alterations,
including changes in microRNA (miR) expression. Here we find miR-22 triggers epithelial …

Genome-wide detection of cytosine methylation by single molecule real-time sequencing

OYO Tse, P Jiang, SH Cheng, W Peng… - Proceedings of the …, 2021 - National Acad Sciences
5-Methylcytosine (5mC) is an important type of epigenetic modification. Bisulfite sequencing
(BS-seq) has limitations, such as severe DNA degradation. Using single molecule real-time …

Modulation of TET2 expression and 5-methylcytosine oxidation by the CXXC domain protein IDAX

M Ko, J An, HS Bandukwala, L Chavez, T Äijö… - Nature, 2013 - nature.com
Abstract TET (ten-eleven-translocation) proteins are Fe (ii)-and α-ketoglutarate-dependent
dioxygenases,, that modify the methylation status of DNA by successively oxidizing 5 …

Phthalate exposure and long-term epigenomic consequences: a review

S Dutta, DK Haggerty, DA Rappolee… - Frontiers in genetics, 2020 - frontiersin.org
Phthalates are esters of phthalic acid which are used in cosmetics and other daily personal
care products. They are also used in polyvinyl chloride (PVC) plastics to increase durability …