Network-based technologies for early drug discovery
C Fotis, A Antoranz, D Hatziavramidis… - Drug discovery today, 2018 - Elsevier
Highlights•The reductionist drug discovery approach entails high attrition rates.•Topology-
based pathway analysis can unravel the disease mechanism (s).•Candidate targets can be …
based pathway analysis can unravel the disease mechanism (s).•Candidate targets can be …
Drug repositioning through network pharmacology
H Ye, J Wei, K Tang, R Feuers… - Current topics in …, 2016 - ingentaconnect.com
Low drug productivity has been a significant problem of the pharmaceutical industry for
several decades even though numerous novel technologies were introduced during this …
several decades even though numerous novel technologies were introduced during this …
[HTML][HTML] Zika virus targets glioblastoma stem cells through a SOX2-integrin αvβ5 axis
Zika virus (ZIKV) causes microcephaly by killing neural precursor cells (NPCs) and other
brain cells. ZIKV also displays therapeutic oncolytic activity against glioblastoma (GBM) stem …
brain cells. ZIKV also displays therapeutic oncolytic activity against glioblastoma (GBM) stem …
Traumatic brain injury results in unique microglial and astrocyte transcriptomes enriched for type I interferon response
BP Todd, MS Chimenti, Z Luo, PJ Ferguson… - Journal of …, 2021 - Springer
Background Traumatic brain injury (TBI) is a leading cause of death and disability that lacks
neuroprotective therapies. Following a TBI, secondary injury response pathways are …
neuroprotective therapies. Following a TBI, secondary injury response pathways are …
Identifying significantly impacted pathways and putative mechanisms with iPathwayGuide
S Ahsan, S Drăghici - Current protocols in bioinformatics, 2017 - Wiley Online Library
Abstract iPathwayGuide is a gene expression analysis tool that provides biological context
and inferences from data generated by high‐throughput sequencing. iPathwayGuide utilizes …
and inferences from data generated by high‐throughput sequencing. iPathwayGuide utilizes …
GeneWalk identifies relevant gene functions for a biological context using network representation learning
A bottleneck in high-throughput functional genomics experiments is identifying the most
important genes and their relevant functions from a list of gene hits. Gene Ontology (GO) …
important genes and their relevant functions from a list of gene hits. Gene Ontology (GO) …
[HTML][HTML] Keratinocyte FABP5-VCP complex mediates recruitment of neutrophils in psoriasis
One of the hallmarks of intractable psoriasis is neutrophil infiltration in skin lesions.
However, detailed molecular mechanisms of neutrophil chemotaxis and activation remain …
However, detailed molecular mechanisms of neutrophil chemotaxis and activation remain …
Unsupervised extraction of stable expression signatures from public compendia with an ensemble of neural networks
Cross-experiment comparisons in public data compendia are challenged by unmatched
conditions and technical noise. The ADAGE method, which performs unsupervised …
conditions and technical noise. The ADAGE method, which performs unsupervised …
Bioconductor's EnrichmentBrowser: seamless navigation through combined results of set-& network-based enrichment analysis
Background Enrichment analysis of gene expression data is essential to find functional
groups of genes whose interplay can explain experimental observations. Numerous …
groups of genes whose interplay can explain experimental observations. Numerous …
Upregulation of fatty acid synthesis genes in the livers of adolescent female rats caused by inhalation exposure to PCB52 (2, 2′, 5, 5′-Tetrachlorobiphenyl)
Elevated airborne PCB levels in older schools are concerning due to their health impacts,
including cancer, metabolic dysfunction-associated steatotic liver disease (MASLD) …
including cancer, metabolic dysfunction-associated steatotic liver disease (MASLD) …