Building essential biodiversity variables (EBV s) of species distribution and abundance at a global scale
Much biodiversity data is collected worldwide, but it remains challenging to assemble the
scattered knowledge for assessing biodiversity status and trends. The concept of E ssential …
scattered knowledge for assessing biodiversity status and trends. The concept of E ssential …
Towards global data products of Essential Biodiversity Variables on species traits
Abstract Essential Biodiversity Variables (EBVs) allow observation and reporting of global
biodiversity change, but a detailed framework for the empirical derivation of specific EBVs …
biodiversity change, but a detailed framework for the empirical derivation of specific EBVs …
A communal catalogue reveals Earth's multiscale microbial diversity
Our growing awareness of the microbial world's importance and diversity contrasts starkly
with our limited understanding of its fundamental structure. Despite recent advances in DNA …
with our limited understanding of its fundamental structure. Despite recent advances in DNA …
Unraveling the functional dark matter through global metagenomics
Metagenomes encode an enormous diversity of proteins, reflecting a multiplicity of functions
and activities,. Exploration of this vast sequence space has been limited to a comparative …
and activities,. Exploration of this vast sequence space has been limited to a comparative …
QIIME 2 enables comprehensive end‐to‐end analysis of diverse microbiome data and comparative studies with publicly available data
QIIME 2 is a completely re‐engineered microbiome bioinformatics platform based on the
popular QIIME platform, which it has replaced. QIIME 2 facilitates comprehensive and fully …
popular QIIME platform, which it has replaced. QIIME 2 facilitates comprehensive and fully …
<? mode longmeta?> SPIRE: a Searchable, Planetary-scale mIcrobiome REsource
Meta'omic data on microbial diversity and function accrue exponentially in public
repositories, but derived information is often siloed according to data type, study or sampled …
repositories, but derived information is often siloed according to data type, study or sampled …
FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration
The construction of high capacity data sharing networks to support increasing government
and commercial data exchange has highlighted a key roadblock: the content of existing …
and commercial data exchange has highlighted a key roadblock: the content of existing …
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes
The interpretation of genomic, transcriptomic and other microbial 'omics data is highly
dependent on the availability of well-annotated genomes. As the number of publicly …
dependent on the availability of well-annotated genomes. As the number of publicly …
Future vision for autonomous ocean observations
C Whitt, J Pearlman, B Polagye, F Caimi… - Frontiers in Marine …, 2020 - frontiersin.org
Autonomous platforms already make observations over a wide range of temporal and spatial
scales, measuring salinity, temperature, nitrate, pressure, oxygen, biomass, and many other …
scales, measuring salinity, temperature, nitrate, pressure, oxygen, biomass, and many other …
Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
RNA sequencing approaches, including metagenomics, has led to the discovery of a
multitude of uncultivated virus genome sequences 1–12. These sequences improve our …
multitude of uncultivated virus genome sequences 1–12. These sequences improve our …