Prevalence and predictors of data and code sharing in the medical and health sciences: systematic review with meta-analysis of individual participant data

DG Hamilton, K Hong, H Fraser, A Rowhani-Farid… - bmj, 2023 - bmj.com
Objectives To synthesise research investigating data and code sharing in medicine and
health to establish an accurate representation of the prevalence of sharing, how this …

Genetic prognostic and predictive markers in colorectal cancer

A Walther, E Johnstone, C Swanton, R Midgley… - Nature Reviews …, 2009 - nature.com
Despite many studies of the likely survival outcome of individual patients with colorectal
cancer, our knowledge of this subject remains poor. Until recently, we had virtually no …

High-plex immunofluorescence imaging and traditional histology of the same tissue section for discovering image-based biomarkers

JR Lin, YA Chen, D Campton, J Cooper, S Coy, C Yapp… - Nature cancer, 2023 - nature.com
Precision medicine is critically dependent on better methods for diagnosing and staging
disease and predicting drug response. Histopathology using hematoxylin and eosin (H&E) …

Reporting recommendations for tumor marker prognostic studies (REMARK): explanation and elaboration

DG Altman, LM McShane, W Sauerbrei, SE Taube - BMC medicine, 2012 - Springer
Abstract Background The Reporting Recommendations for Tumor Marker Prognostic
Studies (REMARK) checklist consists of 20 items to report for published tumor marker …

[HTML][HTML] Why most published research findings are false

JPA Ioannidis - PLoS medicine, 2005 - journals.plos.org
There is increasing concern that most current published research findings are false. The
probability that a research claim is true may depend on study power and bias, the number of …

Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer

Y Wang, JGM Klijn, Y Zhang, AM Sieuwerts, MP Look… - The Lancet, 2005 - thelancet.com
Background Genome-wide measures of gene expression can identify patterns of gene
activity that subclassify tumours and might provide a better means than is currently available …

Contradicted and initially stronger effects in highly cited clinical research

JPA Ioannidis - jama, 2005 - jamanetwork.com
ContextControversy and uncertainty ensue when the results of clinical research on the
effectiveness of interventions are subsequently contradicted. Controversies are most …

[HTML][HTML] The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

L Shi, G Campbell, WD Jones… - Nature …, 2010 - fda-researchportal.esploro …
Abstract Animals Breast Neoplasms-diagnosis Breast Neoplasms-genetics Disease Models,
Animal Female Gene Expression Profiling-methods Gene Expression Profiling-standards …

Sharing detailed research data is associated with increased citation rate

HA Piwowar, RS Day, DB Fridsma - PloS one, 2007 - journals.plos.org
Background Sharing research data provides benefit to the general scientific community, but
the benefit is less obvious for the investigator who makes his or her data available. Principal …

Statistical strategies for avoiding false discoveries in metabolomics and related experiments

DI Broadhurst, DB Kell - Metabolomics, 2006 - Springer
Many metabolomics, and other high-content or high-throughput, experiments are set up
such that the primary aim is the discovery of biomarker metabolites that can discriminate …