Coronavirus envelope protein: current knowledge

D Schoeman, BC Fielding - Virology journal, 2019 - Springer
Abstract Background Coronaviruses (CoVs) primarily cause enzootic infections in birds and
mammals but, in the last few decades, have shown to be capable of infecting humans as …

The transporter classification database (TCDB): recent advances

MH Saier Jr, VS Reddy, BV Tsu, MS Ahmed… - Nucleic acids …, 2016 - academic.oup.com
Abstract The Transporter Classification Database (TCDB; http://www. tcdb. org) is a freely
accessible reference database for transport protein research, which provides structural …

Tissue-based map of the human proteome

M Uhlén, L Fagerberg, BM Hallström, C Lindskog… - Science, 2015 - science.org
INTRODUCTION Resolving the molecular details of proteome variation in the different
tissues and organs of the human body would greatly increase our knowledge of human …

The in silico human surfaceome

D Bausch-Fluck, U Goldmann, S Müller… - Proceedings of the …, 2018 - pnas.org
Cell-surface proteins are of great biomedical importance, as demonstrated by the fact that
66% of approved human drugs listed in the DrugBank database target a cell-surface protein …

The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides

KD Tsirigos, C Peters, N Shu, L Käll… - Nucleic acids …, 2015 - academic.oup.com
Abstract TOPCONS (http://topcons. net/) is a widely used web server for consensus
prediction of membrane protein topology. We hereby present a major update to the server …

A brief history of protein sorting prediction

H Nielsen, KD Tsirigos, S Brunak, G von Heijne - The protein journal, 2019 - Springer
Ever since the signal hypothesis was proposed in 1971, the exact nature of signal peptides
has been a focus point of research. The prediction of signal peptides and protein subcellular …

GENCODE: the reference human genome annotation for The ENCODE Project

J Harrow, A Frankish, JM Gonzalez, E Tapanari… - Genome …, 2012 - genome.cshlp.org
The GENCODE Consortium aims to identify all gene features in the human genome using a
combination of computational analysis, manual annotation, and experimental validation …

SignalP 4.0: discriminating signal peptides from transmembrane regions

TN Petersen, S Brunak, G Von Heijne, H Nielsen - Nature methods, 2011 - nature.com
To the Editor: The secretory signal peptide is a ubiquitous proteinsorting signal that targets
its passenger protein for translocation across the endoplasmic reticulum membrane in …

Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes

I Ezkurdia, D Juan, JM Rodriguez… - Human molecular …, 2014 - academic.oup.com
Determining the full complement of protein-coding genes is a key goal of genome
annotation. The most powerful approach for confirming protein-coding potential is the …

PredictProtein—an open resource for online prediction of protein structural and functional features

G Yachdav, E Kloppmann, L Kajan… - Nucleic acids …, 2014 - academic.oup.com
PredictProtein is a meta-service for sequence analysis that has been predicting structural
and functional features of proteins since 1992. Queried with a protein sequence it returns …