A system and architecture for reusable abstractions of manufacturing processes

A Brodsky, M Krishnamoorthy… - … Conference on Big …, 2016 - ieeexplore.ieee.org
In this paper we report on the development of a system for managing a repository and
conducting analysis and optimization on manufacturing performance models. The repository …

Accelerating Bowtie2 with a lock-less concurrency approach and memory affinity

C Misale - 2014 22nd Euromicro International Conference on …, 2014 - ieeexplore.ieee.org
The implementation of DNA alignment tools for Bioinformatics lead to face different problems
that dip into performances. A single alignment take an amount of time that is not predictable …

Sequence alignment tools: one parallel pattern to rule them all?

C Misale, G Ferrero, M Torquati… - BioMed research …, 2014 - Wiley Online Library
In this paper, we advocate high‐level programming methodology for next generation
sequencers (NGS) alignment tools for both productivity and absolute performance. We …

PSALR: Parallel Sequence Alignment for long Sequence Read with Hash Model

N Aghaee-Maybodi, A Nezarat, S Emadi… - Journal of AI and …, 2024 - jad.shahroodut.ac.ir
Sequence alignment and genome map** pose significant challenges, primarily focusing
on speed and storage space requirements for mapped sequences. With the ever-increasing …

[PDF][PDF] PSALR: Parallel Sequence Alignment for long Sequence Read with Hash model

AM Nasrin, N Amin, E Sima, GM Reza - 2024 - scholar.archive.org
Sequence alignment and genome map** pose significant challenges, primarily focusing
on speed and storage space requirements for mapped sequences. With the ever-increasing …

[PDF][PDF] Inferences of Transcriptional and Translational Regulatory Modules for Systems Biology: A Review

SA Bhyratae, N Mangla - academia.edu
Computational molecular biology is the superset of Bioinformatics. Areas such as genomics,
map**, sequencing, determination of sequence and structure are applied by computer …

[PDF][PDF] Research Article Sequence Alignment Tools: One Parallel Pattern to Rule Them All?

In this paper, we advocate high-level programming methodology for next generation
sequencers (NGS) alignment tools for both productivity and absolute performance. We …