Democratizing knowledge representation with BioCypher

S Lobentanzer, P Aloy, J Baumbach, B Bohar… - Nature …, 2023 - nature.com
Biomedical data are amassed at an ever-increasing rate, and machine learning tools that
use prior knowledge in combination with biomedical big data are gaining much traction 1, 2 …

[HTML][HTML] Annotated dataset creation through large language models for non-english medical NLP

J Frei, F Kramer - Journal of Biomedical Informatics, 2023 - Elsevier
Obtaining text datasets with semantic annotations is an effortful process, yet crucial for
supervised training in natural language processing (NLP). In general, develo** and …

German medical informatics initiative

SC Semler, F Wissing, R Heyder - Methods of information in …, 2018 - thieme-connect.com
This article is part of the Focus Theme of Methods of Information in Medicine on the German
Medical Informatics Initiative. The Medical Informatics Initiative (MII) was launched within the …

Arbeitsgruppe Interoperabilität: Kerndatensatz und Informationssysteme für Integration und Austausch von Daten in der Medizininformatik-Initiative

D Ammon, M Kurscheidt, K Buckow, T Kirsten… - Bundesgesundheitsblatt …, 2024 - Springer
Zusammenfassung Die Arbeitsgruppe Interoperabilität der Medizininformatik-Initiative (MII)
ist die Plattform für die Abstimmung übergreifender Vorgehensweisen, Datenstrukturen und …

[HTML][HTML] Generation of a fast healthcare interoperability resources (FHIR)-based ontology for federated feasibility queries in the context of COVID-19: feasibility study

L Rosenau, RW Majeed, J Ingenerf, A Kiel… - JMIR medical …, 2022 - medinform.jmir.org
Background The COVID-19 pandemic highlighted the importance of making research data
from all German hospitals available to scientists to respond to current and future pandemics …

[HTML][HTML] Use of Metadata-Driven Approaches for Data Harmonization in the Medical Domain: Sco** Review

Y Peng, F Bathelt, R Gebler, R Gött… - JMIR Medical …, 2024 - medinform.jmir.org
Background: Multisite clinical studies are increasingly using real-world data to gain real-
world evidence. However, due to the heterogeneity of source data, it is difficult to analyze …

[HTML][HTML] Uncovering harmonization potential in health care data through iterative refinement of fast healthcare interoperability resources profiles based on …

L Rosenau, P Behrend, J Wiedekopf… - JMIR Medical …, 2024 - medinform.jmir.org
Background: Cross-institutional interoperability between health care providers remains a
recurring challenge worldwide. The German Medical Informatics Initiative, a collaboration of …

Record linkage based patient intersection cardinality for rare disease studies using Mainzelliste and secure multi-party computation

T Kussel, T Brenner, G Tremper, J Schepers… - Journal of translational …, 2022 - Springer
Background The low number of patients suffering from any given rare diseases poses a
difficult problem for medical research: With the exception of some specialized biobanks and …

Hands on the medical informatics initiative core data set—lessons learned from converting the MIMIC-IV

H Ulrich, P Behrend, J Wiedekopf… - … Data Sciences 2021 …, 2021 - ebooks.iospress.nl
With the steady increase in the connectivity of the healthcare system, new requirements and
challenges are emerging. In addition to the seamless exchange of data between service …

Die Medizininformatik-Initiative im Überblick–Aufbau einer Gesundheitsforschungsdateninfrastruktur in Deutschland

SC Semler, M Boeker, R Eils, D Krefting… - Bundesgesundheitsblatt …, 2024 - Springer
Die vom Bundesministerium für Bildung und Forschung (BMBF) 2016–2027 geförderte
Medizininformatik-Initiative (MII) schafft erfolgreich Grundlagen für die datenbasierte Medizin …