Adaptive template transformer for mitochondria segmentation in electron microscopy images

Y Pan, N Luo, R Sun, M Meng… - Proceedings of the …, 2023 - openaccess.thecvf.com
Mitochondria, as tiny structures within the cell, are of significant importance to study cell
functions for biological and clinical analysis. And exploring how to automatically segment …

Biomedical Image Segmentation: A Systematic Literature Review of Deep Learning Based Object Detection Methods

F Wahid, Y Ma, D Khan, M Aamir… - arxiv preprint arxiv …, 2024 - arxiv.org
Biomedical image segmentation plays a vital role in diagnosis of diseases across various
organs. Deep learning-based object detection methods are commonly used for such …

BioSAM: Generating SAM Prompts From Superpixel Graph for Biological Instance Segmentation

M Cai, X Liu, Z **ong, X Chen - IEEE Journal of Biomedical and …, 2024 - ieeexplore.ieee.org
Proposal-free instance segmentation methods have significantly advanced the field of
biological image analysis. Recently, the Segment Anything Model (SAM) has shown an …

Learning cross-representation affinity consistency for sparsely supervised biomedical instance segmentation

X Liu, W Huang, Z **ong, S Zhou… - Proceedings of the …, 2023 - openaccess.thecvf.com
Sparse instance-level supervision has recently been explored to address insufficient
annotation in biomedical instance segmentation, which is easier to annotate crowded …

Pctrans: Position-guided transformer with query contrast for biological instance segmentation

Q Chen, W Huang, X Liu, J Li… - Proceedings of the IEEE …, 2023 - openaccess.thecvf.com
Recently, query-based transformer gradually draws attention in segmentation tasks due to
its powerful ability. Compared to instance segmentation in natural images, biological …

A 3D semantic segmentation network for accurate neuronal soma segmentation

L Ma, Q Zhong, Y Wang, X Yang… - Journal of Innovative …, 2025 - World Scientific
Neuronal soma segmentation plays a crucial role in neuroscience applications. However,
the fine structure, such as boundaries, small-volume neuronal somata and fibers, are …

Domain adaptive synapse detection with weak point annotations

Q Chen, W Huang, Y Zhang… - 2024 IEEE International …, 2024 - ieeexplore.ieee.org
The development of learning-based methods has greatly improved the detection of
synapses from electron microscopy (EM) images. However, training a model for each …

Efficient Neuron Segmentation in Electron Microscopy by Affinity-Guided Queries

H Chen, C Tang, X Li, X Hu - The Thirteenth International Conference on … - openreview.net
Accurate segmentation of neurons in electron microscopy (EM) images plays a crucial role
in understanding the intricate wiring patterns of the brain. Existing automatic neuron …