Unlocking the magic in mycelium: Using synthetic biology to optimize filamentous fungi for biomanufacturing and sustainability

C Jo, J Zhang, JM Tam, GM Church, AS Khalil… - Materials Today Bio, 2023 - Elsevier
Filamentous fungi drive carbon and nutrient cycling across our global ecosystems, through
its interactions with growing and decaying flora and their constituent microbiomes. The …

pBAM1: an all-synthetic genetic tool for analysis and construction of complex bacterial phenotypes

E Martínez-García, B Calles, M Arévalo-Rodríguez… - BMC microbiology, 2011 - Springer
Background Since publication in 1977 of plasmid pBR322, many breakthroughs in Biology
have depended on increasingly sophisticated vector platforms for analysis and engineering …

Generation of a dual-functional split-reporter protein for monitoring membrane fusion using self-associating split GFP

H Ishikawa, F Meng, N Kondo… - … , Design & Selection, 2012 - academic.oup.com
Split reporter proteins capable of self-association and reactivation have applications in
biomedical research, but designing these proteins, especially the selection of appropriate …

Diverse roles of TssA‐like proteins in the assembly of bacterial type VI secretion systems

JP Schneider, S Nazarov, R Adaixo, M Liuzzo… - The EMBO …, 2019 - embopress.org
Protein translocation by the bacterial type VI secretion system (T6 SS) is driven by a rapid
contraction of a sheath assembled around a tube with associated effectors. Here, we show …

Targeted insertional mutagenesis libraries for deep domain insertion profiling

W Coyote-Maestas, D Nedrud, S Okorafor… - Nucleic acids …, 2020 - academic.oup.com
Abstract Domain recombination is a key principle in protein evolution and protein
engineering, but inserting a donor domain into every position of a target protein is not easily …

Direct and convenient measurement of plasmid stability in lab and clinical isolates of E. coli

S Chen, M Larsson, RC Robinson, SL Chen - Scientific reports, 2017 - nature.com
Plasmids are important mobile elements in bacteria, contributing to evolution, virulence, and
antibiotic resistance. Natural plasmids are generally large and maintained at low copy …

Avoiding the ends: internal epitope tagging of proteins using transposon Tn7

RE Zordan, BJ Beliveau, JA Trow, NL Craig… - Genetics, 2015 - academic.oup.com
Peptide tags fused to proteins are used in a variety of applications, including as affinity tags
for purification, epitope tags for immunodetection, or fluorescent protein tags for …

Every transcription factor deserves its map: Scaling up epitope tagging of proteins to bypass antibody problems

EC Partridge, TA Watkins, EM Mendenhall - Bioessays, 2016 - Wiley Online Library
Genome‐wide identification of transcription factor binding sites with the ChIP‐seq method is
an extremely important scientific endeavor− one that should ideally be performed for every …

TnFLX: a Third-Generation mariner-Based Transposon System for Bacillus subtilis

F Dempwolff, S Sanchez… - Applied and Environmental …, 2020 - Am Soc Microbiol
Random transposon mutagenesis is a powerful and unbiased genetic approach to answer
fundamental biological questions. Here, we introduce an improved mariner-based …

A simple, robust, broadly applicable insertion mutagenesis method to create random fluorescent protein: target protein fusions

A Pike, C Pietryski, P Deighan… - G3: Genes …, 2024 - academic.oup.com
A simple, broadly applicable method was developed using an in vitro transposition reaction
followed by transformation into Escherichia coli and screening plates for fluorescent …