Unlocking the magic in mycelium: Using synthetic biology to optimize filamentous fungi for biomanufacturing and sustainability
Filamentous fungi drive carbon and nutrient cycling across our global ecosystems, through
its interactions with growing and decaying flora and their constituent microbiomes. The …
its interactions with growing and decaying flora and their constituent microbiomes. The …
pBAM1: an all-synthetic genetic tool for analysis and construction of complex bacterial phenotypes
Background Since publication in 1977 of plasmid pBR322, many breakthroughs in Biology
have depended on increasingly sophisticated vector platforms for analysis and engineering …
have depended on increasingly sophisticated vector platforms for analysis and engineering …
Generation of a dual-functional split-reporter protein for monitoring membrane fusion using self-associating split GFP
H Ishikawa, F Meng, N Kondo… - … , Design & Selection, 2012 - academic.oup.com
Split reporter proteins capable of self-association and reactivation have applications in
biomedical research, but designing these proteins, especially the selection of appropriate …
biomedical research, but designing these proteins, especially the selection of appropriate …
Diverse roles of TssA‐like proteins in the assembly of bacterial type VI secretion systems
JP Schneider, S Nazarov, R Adaixo, M Liuzzo… - The EMBO …, 2019 - embopress.org
Protein translocation by the bacterial type VI secretion system (T6 SS) is driven by a rapid
contraction of a sheath assembled around a tube with associated effectors. Here, we show …
contraction of a sheath assembled around a tube with associated effectors. Here, we show …
Targeted insertional mutagenesis libraries for deep domain insertion profiling
W Coyote-Maestas, D Nedrud, S Okorafor… - Nucleic acids …, 2020 - academic.oup.com
Abstract Domain recombination is a key principle in protein evolution and protein
engineering, but inserting a donor domain into every position of a target protein is not easily …
engineering, but inserting a donor domain into every position of a target protein is not easily …
Direct and convenient measurement of plasmid stability in lab and clinical isolates of E. coli
Plasmids are important mobile elements in bacteria, contributing to evolution, virulence, and
antibiotic resistance. Natural plasmids are generally large and maintained at low copy …
antibiotic resistance. Natural plasmids are generally large and maintained at low copy …
Avoiding the ends: internal epitope tagging of proteins using transposon Tn7
Peptide tags fused to proteins are used in a variety of applications, including as affinity tags
for purification, epitope tags for immunodetection, or fluorescent protein tags for …
for purification, epitope tags for immunodetection, or fluorescent protein tags for …
Every transcription factor deserves its map: Scaling up epitope tagging of proteins to bypass antibody problems
EC Partridge, TA Watkins, EM Mendenhall - Bioessays, 2016 - Wiley Online Library
Genome‐wide identification of transcription factor binding sites with the ChIP‐seq method is
an extremely important scientific endeavor− one that should ideally be performed for every …
an extremely important scientific endeavor− one that should ideally be performed for every …
TnFLX: a Third-Generation mariner-Based Transposon System for Bacillus subtilis
F Dempwolff, S Sanchez… - Applied and Environmental …, 2020 - Am Soc Microbiol
Random transposon mutagenesis is a powerful and unbiased genetic approach to answer
fundamental biological questions. Here, we introduce an improved mariner-based …
fundamental biological questions. Here, we introduce an improved mariner-based …
A simple, robust, broadly applicable insertion mutagenesis method to create random fluorescent protein: target protein fusions
A Pike, C Pietryski, P Deighan… - G3: Genes …, 2024 - academic.oup.com
A simple, broadly applicable method was developed using an in vitro transposition reaction
followed by transformation into Escherichia coli and screening plates for fluorescent …
followed by transformation into Escherichia coli and screening plates for fluorescent …