Learning dynamical models of single and collective cell migration: a review

D Brückner, CP Broedersz - Reports on Progress in Physics, 2024 - iopscience.iop.org
Single and collective cell migration are fundamental processes critical for physiological
phenomena ranging from embryonic development and immune response to wound healing …

Estimating entropy production from waiting time distributions

DJ Skinner, J Dunkel - Physical review letters, 2021 - APS
Living systems operate far from thermal equilibrium by converting the chemical potential of
ATP into mechanical work to achieve growth, replication, or locomotion. Given time series …

Improved bounds on entropy production in living systems

DJ Skinner, J Dunkel - Proceedings of the National Academy of Sciences, 2021 - pnas.org
Living systems maintain or increase local order by working against the second law of
thermodynamics. Thermodynamic consistency is restored as they consume free energy …

Introduction to active matter

M Das, CF Schmidt, M Murrell - Soft Matter, 2020 - pubs.rsc.org
Active matter includes living and nonliving systems that have in common that they contain
energy-consuming and forcegenerating microscopic constituents that drive emergent …

The lack of temporal brain dynamics asymmetry as a signature of impaired consciousness states

E G-Guzmán, YS Perl, J Vohryzek… - Interface …, 2023 - royalsocietypublishing.org
Life is a constant battle against equilibrium. From the cellular level to the macroscopic scale,
living organisms as dissipative systems require the violation of their detailed balance, ie …

Estimating time-dependent entropy production from non-equilibrium trajectories

S Otsubo, SK Manikandan, T Sagawa… - Communications …, 2022 - nature.com
The rate of entropy production provides a useful quantitative measure of a non-equilibrium
system and estimating it directly from time-series data from experiments is highly desirable …

Learning entropy production via neural networks

DK Kim, Y Bae, S Lee, H Jeong - Physical Review Letters, 2020 - APS
This Letter presents a neural estimator for entropy production (NEEP), that estimates entropy
production (EP) from trajectories of relevant variables without detailed information on the …

Neural force functional for non-equilibrium many-body colloidal systems

T Zimmermann, F Sammüller, S Hermann… - Machine Learning …, 2024 - iopscience.iop.org
We combine power functional theory and machine learning to study non-equilibrium
overdamped many-body systems of colloidal particles at the level of one-body fields. We first …

Quantitative analysis of non-equilibrium systems from short-time experimental data

SK Manikandan, S Ghosh, A Kundu, B Das… - Communications …, 2021 - nature.com
Estimating entropy production directly from experimental trajectories is of great current
interest but often requires a large amount of data or knowledge of the underlying dynamics …

Irreversibility in linear systems with colored noise

G Gradziuk, G Torregrosa, CP Broedersz - Physical Review E, 2022 - APS
Time irreversibility is a distinctive feature of nonequilibrium dynamics and several measures
of irreversibility have been introduced to assess the distance from thermal equilibrium of a …