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Learning dynamical models of single and collective cell migration: a review
Single and collective cell migration are fundamental processes critical for physiological
phenomena ranging from embryonic development and immune response to wound healing …
phenomena ranging from embryonic development and immune response to wound healing …
Estimating entropy production from waiting time distributions
Living systems operate far from thermal equilibrium by converting the chemical potential of
ATP into mechanical work to achieve growth, replication, or locomotion. Given time series …
ATP into mechanical work to achieve growth, replication, or locomotion. Given time series …
Improved bounds on entropy production in living systems
Living systems maintain or increase local order by working against the second law of
thermodynamics. Thermodynamic consistency is restored as they consume free energy …
thermodynamics. Thermodynamic consistency is restored as they consume free energy …
Introduction to active matter
Active matter includes living and nonliving systems that have in common that they contain
energy-consuming and forcegenerating microscopic constituents that drive emergent …
energy-consuming and forcegenerating microscopic constituents that drive emergent …
The lack of temporal brain dynamics asymmetry as a signature of impaired consciousness states
Life is a constant battle against equilibrium. From the cellular level to the macroscopic scale,
living organisms as dissipative systems require the violation of their detailed balance, ie …
living organisms as dissipative systems require the violation of their detailed balance, ie …
Estimating time-dependent entropy production from non-equilibrium trajectories
The rate of entropy production provides a useful quantitative measure of a non-equilibrium
system and estimating it directly from time-series data from experiments is highly desirable …
system and estimating it directly from time-series data from experiments is highly desirable …
Learning entropy production via neural networks
This Letter presents a neural estimator for entropy production (NEEP), that estimates entropy
production (EP) from trajectories of relevant variables without detailed information on the …
production (EP) from trajectories of relevant variables without detailed information on the …
Neural force functional for non-equilibrium many-body colloidal systems
We combine power functional theory and machine learning to study non-equilibrium
overdamped many-body systems of colloidal particles at the level of one-body fields. We first …
overdamped many-body systems of colloidal particles at the level of one-body fields. We first …
Quantitative analysis of non-equilibrium systems from short-time experimental data
Estimating entropy production directly from experimental trajectories is of great current
interest but often requires a large amount of data or knowledge of the underlying dynamics …
interest but often requires a large amount of data or knowledge of the underlying dynamics …
Irreversibility in linear systems with colored noise
Time irreversibility is a distinctive feature of nonequilibrium dynamics and several measures
of irreversibility have been introduced to assess the distance from thermal equilibrium of a …
of irreversibility have been introduced to assess the distance from thermal equilibrium of a …