A topological loss function for deep-learning based image segmentation using persistent homology

JR Clough, N Byrne, I Oksuz, VA Zimmer… - IEEE transactions on …, 2020 - ieeexplore.ieee.org
We introduce a method for training neural networks to perform image or volume
segmentation in which prior knowledge about the topology of the segmented object can be …

Topological data analysis and machine learning

D Leykam, DG Angelakis - Advances in Physics: X, 2023 - Taylor & Francis
Topological data analysis refers to approaches for systematically and reliably computing
abstract 'shapes' of complex data sets. There are various applications of topological data …

Does the brain behave like a (complex) network? I. Dynamics

D Papo, JM Buldú - Physics of Life Reviews, 2023 - Elsevier
Graph theory is now becoming a standard tool in system-level neuroscience. However,
endowing observed brain anatomy and dynamics with a complex network structure does not …

Analysis of big data in gait biomechanics: Current trends and future directions

A Phinyomark, G Petri, E Ibáñez-Marcelo… - Journal of medical and …, 2018 - Springer
The increasing amount of data in biomechanics research has greatly increased the
importance of develo** advanced multivariate analysis and machine learning techniques …

[HTML][HTML] Topological analysis of data

A Patania, F Vaccarino, G Petri - EPJ Data Science, 2017 - Springer
Propelled by a fast evolving landscape of techniques and datasets, data science is growing
rapidly. Against this background, topological data analysis (TDA) has carved itself a niche …

Persistence curves: A canonical framework for summarizing persistence diagrams

YM Chung, A Lawson - Advances in Computational Mathematics, 2022 - Springer
Persistence diagrams are one of the main tools in the field of Topological Data Analysis
(TDA). They contain fruitful information about the shape of data. The use of machine learning …

The persistence landscape and some of its properties

P Bubenik - Topological Data Analysis: The Abel Symposium 2018, 2020 - Springer
Persistence landscapes map persistence diagrams into a function space, which may often
be taken to be a Banach space or even a Hilbert space. In the latter case, it is a feature map …

Topological phase transitions in functional brain networks

FAN Santos, EP Raposo, MD Coutinho-Filho, M Copelli… - Physical Review E, 2019 - APS
Functional brain networks are often constructed by quantifying correlations between time
series of activity of brain regions. Their topological structure includes nodes, edges …

Quantitative analysis of phase transitions in two-dimensional models using persistent homology

N Sale, J Giansiracusa, B Lucini - Physical Review E, 2022 - APS
We use persistent homology and persistence images as an observable of three variants of
the two-dimensional XY model to identify and study their phase transitions. We examine …

Quantitative and interpretable order parameters for phase transitions from persistent homology

A Cole, GJ Loges, G Shiu - Physical Review B, 2021 - APS
We apply modern methods in computational topology to the task of discovering and
characterizing phase transitions. As illustrations, we apply our method to four two …