A topological loss function for deep-learning based image segmentation using persistent homology
We introduce a method for training neural networks to perform image or volume
segmentation in which prior knowledge about the topology of the segmented object can be …
segmentation in which prior knowledge about the topology of the segmented object can be …
Topological data analysis and machine learning
Topological data analysis refers to approaches for systematically and reliably computing
abstract 'shapes' of complex data sets. There are various applications of topological data …
abstract 'shapes' of complex data sets. There are various applications of topological data …
Does the brain behave like a (complex) network? I. Dynamics
D Papo, JM Buldú - Physics of Life Reviews, 2023 - Elsevier
Graph theory is now becoming a standard tool in system-level neuroscience. However,
endowing observed brain anatomy and dynamics with a complex network structure does not …
endowing observed brain anatomy and dynamics with a complex network structure does not …
Analysis of big data in gait biomechanics: Current trends and future directions
The increasing amount of data in biomechanics research has greatly increased the
importance of develo** advanced multivariate analysis and machine learning techniques …
importance of develo** advanced multivariate analysis and machine learning techniques …
[HTML][HTML] Topological analysis of data
Propelled by a fast evolving landscape of techniques and datasets, data science is growing
rapidly. Against this background, topological data analysis (TDA) has carved itself a niche …
rapidly. Against this background, topological data analysis (TDA) has carved itself a niche …
Persistence curves: A canonical framework for summarizing persistence diagrams
YM Chung, A Lawson - Advances in Computational Mathematics, 2022 - Springer
Persistence diagrams are one of the main tools in the field of Topological Data Analysis
(TDA). They contain fruitful information about the shape of data. The use of machine learning …
(TDA). They contain fruitful information about the shape of data. The use of machine learning …
The persistence landscape and some of its properties
P Bubenik - Topological Data Analysis: The Abel Symposium 2018, 2020 - Springer
Persistence landscapes map persistence diagrams into a function space, which may often
be taken to be a Banach space or even a Hilbert space. In the latter case, it is a feature map …
be taken to be a Banach space or even a Hilbert space. In the latter case, it is a feature map …
Topological phase transitions in functional brain networks
Functional brain networks are often constructed by quantifying correlations between time
series of activity of brain regions. Their topological structure includes nodes, edges …
series of activity of brain regions. Their topological structure includes nodes, edges …
Quantitative analysis of phase transitions in two-dimensional models using persistent homology
We use persistent homology and persistence images as an observable of three variants of
the two-dimensional XY model to identify and study their phase transitions. We examine …
the two-dimensional XY model to identify and study their phase transitions. We examine …
Quantitative and interpretable order parameters for phase transitions from persistent homology
We apply modern methods in computational topology to the task of discovering and
characterizing phase transitions. As illustrations, we apply our method to four two …
characterizing phase transitions. As illustrations, we apply our method to four two …