RNA sequencing: the teenage years
R Stark, M Grzelak, J Hadfield - Nature Reviews Genetics, 2019 - nature.com
Over the past decade, RNA sequencing (RNA-seq) has become an indispensable tool for
transcriptome-wide analysis of differential gene expression and differential splicing of …
transcriptome-wide analysis of differential gene expression and differential splicing of …
A field guide to whole‐genome sequencing, assembly and annotation
Genome sequencing projects were long confined to biomedical model organisms and
required the concerted effort of large consortia. Rapid progress in high‐throughput …
required the concerted effort of large consortia. Rapid progress in high‐throughput …
Corset: enabling differential gene expression analysis for de novoassembled transcriptomes
NM Davidson, A Oshlack - Genome biology, 2014 - Springer
Next generation sequencing has made it possible to perform differential gene expression
studies in non-model organisms. For these studies, the need for a reference genome is …
studies in non-model organisms. For these studies, the need for a reference genome is …
Bioinformatic processing of RAD‐seq data dramatically impacts downstream population genetic inference
ABA Shafer, CR Peart, S Tusso… - Methods in Ecology …, 2017 - Wiley Online Library
Restriction site‐associated DNA sequencing (RAD‐seq) provides high‐resolution
population genomic data at low cost, and has become an important component in ecological …
population genomic data at low cost, and has become an important component in ecological …
Mining and development of novel SSR markers using next generation sequencing (NGS) data in plants
S Taheri, T Lee Abdullah, MR Yusop, MM Hanafi… - Molecules, 2018 - mdpi.com
Microsatellites, or simple sequence repeats (SSRs), are one of the most informative and
multi-purpose genetic markers exploited in plant functional genomics. However, the …
multi-purpose genetic markers exploited in plant functional genomics. However, the …
The power and promise of RNA‐seq in ecology and evolution
EV Todd, MA Black, NJ Gemmell - Molecular ecology, 2016 - Wiley Online Library
Reference is regularly made to the power of new genomic sequencing approaches. Using
powerful technology, however, is not the same as having the necessary power to address a …
powerful technology, however, is not the same as having the necessary power to address a …
Atlas of ACE2 gene expression reveals novel insights into transmission of SARS-CoV-2
Abstract The recent pandemic, COVID-19, is caused by a novel coronavirus, SARS-CoV-2,
with elusive origin. SARS-CoV-2 infects mammalian cells via ACE2, a transmembrane …
with elusive origin. SARS-CoV-2 infects mammalian cells via ACE2, a transmembrane …
Recent progress and challenges in population genetics of polyploid organisms: an overview of current state‐of‐the‐art molecular and statistical tools
F Dufresne, M Stift, R Vergilino, BK Mable - Molecular ecology, 2014 - Wiley Online Library
Despite the importance of polyploidy and the increasing availability of new genomic data,
there remain important gaps in our knowledge of polyploid population genetics. These gaps …
there remain important gaps in our knowledge of polyploid population genetics. These gaps …
Power analysis and sample size estimation for RNA-Seq differential expression
T Ching, S Huang, LX Garmire - Rna, 2014 - rnajournal.cshlp.org
It is crucial for researchers to optimize RNA-seq experimental designs for differential
expression detection. Currently, the field lacks general methods to estimate power and …
expression detection. Currently, the field lacks general methods to estimate power and …
Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …