Data-independent acquisition (DIA) mass spectrometry (MS) has emerged as a powerful
technology for high-throughput, accurate, and reproducible quantitative proteomics. This …

Abstract Ribosome profiling (Ribo-Seq) has proven transformative for our understanding of
the human genome and proteome by illuminating thousands of noncanonical sites of …

Human leukocyte antigen (HLA) class I peptide ligands (HLAIps) are key targets for
develo** vaccines and immunotherapies against infectious pathogens or cancer cells …

Rescoring of peptide spectrum matches originating from database search engines enabled
by peptide property predictors is exceeding the performance of peptide identification from …

The OpenProt proteogenomic resource (https://www. openprot. org/) provides users with a
complete and freely accessible set of non-canonical or alternative open reading frames …

Mass spectral libraries are collections of reference spectra, usually associated with specific
analytes from which the spectra were generated, that are used for further downstream …

Amid the advances in genomics, the availability of large reference panels of human
haplotypes is key to account for human diversity within and across populations. However …

Recent developments in machine-learning (ML) and deep-learning (DL) have immense
potential for applications in proteomics, such as generating spectral libraries, improving …

Brachydactyly type E (BDE), shortened metacarpals, metatarsals, cone-shaped epiphyses,
and short stature commonly occurs as a sole phenotype. Parathyroid hormone-like protein …

The genomics landscape is evolving with the emergence of pangenomes, challenging the
conventional single-reference genome model. The new human pangenome reference …