Deep learning for 3D vascular segmentation in hierarchical phase contrast tomography: a case study on kidney

E Yagis, S Aslani, Y Jain, Y Zhou, S Rahmani… - Scientific Reports, 2024 - nature.com
Automated blood vessel segmentation is critical for biomedical image analysis, as vessel
morphology changes are associated with numerous pathologies. Still, precise segmentation …

Brain vessel segmentation using deep learning—a review

MR Goni, NIR Ruhaiyem, M Mustapha… - IEEE …, 2022 - ieeexplore.ieee.org
This article provides a comprehensive review of deep learning-based blood vessel
segmentation of the brain. Cerebrovascular disease develops when blood arteries in the …

Geometric deep learning using vascular surface meshes for modality-independent unruptured intracranial aneurysm detection

KM Timmins, IC Van der Schaaf, IN Vos… - IEEE transactions on …, 2023 - ieeexplore.ieee.org
Early detection of unruptured intracranial aneurysms (UIAs) enables better rupture risk and
preventative treatment assessment. UIAs are usually diagnosed on Time-of-Flight Magnetic …

Deep Learning for 3D Vascular Segmentation in Phase Contrast Tomography

E Yagis, S Aslani, Y Jain, Y Zhou, S Rahmani… - Research …, 2024 - pmc.ncbi.nlm.nih.gov
Automated blood vessel segmentation is critical for biomedical image analysis, as vessel
morphology changes are associated with numerous pathologies. Still, precise segmentation …

USE-Evaluator: Performance metrics for medical image segmentation models supervised by uncertain, small or empty reference annotations in neuroimaging

S Ostmeier, B Axelrod, F Isensee, J Bertels… - Medical Image …, 2023 - Elsevier
Performance metrics for medical image segmentation models are used to measure the
agreement between the reference annotation and the predicted segmentation. Usually …

Calibration techniques for node classification using graph neural networks on medical image data

I Vos, I Bhat, B Velthuis, Y Ruigrok… - Medical Imaging with …, 2024 - proceedings.mlr.press
Miscalibration of deep neural networks (DNNs) can lead to unreliable predictions and hinder
their use in clinical decision-making. This miscalibration is often caused by overconfident …

Deep-learning-based extraction of circle of Willis topology with anatomical priors

D Alblas, IN Vos, MM Lipplaa, C Brune… - Scientific reports, 2024 - nature.com
Abstract The circle of Willis (CoW) is a circular arrangement of arteries in the human brain,
exhibiting significant anatomical variability. The CoW is extensively studied in relation to …

Contour attention network for cerebrovascular segmentation from TOF‐MRA volumetric images

C Yang, H Zhang, D Chi, Y Li, Q **ao, Y Bai… - Medical …, 2024 - Wiley Online Library
Background Cerebrovascular segmentation is a crucial step in the computer‐assisted
diagnosis of cerebrovascular pathologies. However, accurate extraction of cerebral vessels …

Deep learning with vessel surface meshes for intracranial aneurysm detection

KM Timmins, IC van der Schaaf, I Vos… - Medical Imaging …, 2022 - spiedigitallibrary.org
It is important that unruptured intracranial aneurysms (UIAs) are detected early for rupture
risk and treatment assessment. Radiologists usually visually diagnose UIAs on Time-of …

Anatomical Markers Associated With the Presence of Intracranial Aneurysms in Individuals Screened for Aneurysms

IN Vos, RJ van Tuijl, LA Mensing… - Stroke: Vascular and …, 2024 - Am Heart Assoc
BACKGROUND Hemodynamic stress is linked to the development of intracranial aneurysms
(IAs) and may be influenced by anatomic variation of intracranial arteries. We assessed …