Impact of the Human Cell Atlas on medicine

JE Rood, A Maartens, A Hupalowska, SA Teichmann… - Nature medicine, 2022 - nature.com
Single-cell atlases promise to provide a 'missing link'between genes, diseases and
therapies. By identifying the specific cell types, states, programs and contexts where disease …

Understanding tumour endothelial cell heterogeneity and function from single-cell omics

Q Zeng, M Mousa, AS Nadukkandy, L Franssens… - Nature Reviews …, 2023 - nature.com
Anti-angiogenic therapies (AATs) are used to treat different types of cancers. However, their
success is limited owing to insufficient efficacy and resistance. Recently, single-cell omics …

Dictionary learning for integrative, multimodal and scalable single-cell analysis

Y Hao, T Stuart, MH Kowalski, S Choudhary… - Nature …, 2024 - nature.com
Map** single-cell sequencing profiles to comprehensive reference datasets provides a
powerful alternative to unsupervised analysis. However, most reference datasets are …

Identification of hypoxic macrophages in glioblastoma with therapeutic potential for vasculature normalization

W Wang, T Li, Y Cheng, F Li, S Qi, M Mao, J Wu, Q Liu… - Cancer cell, 2024 - cell.com
Monocyte-derived tumor-associated macrophages (Mo-TAMs) intensively infiltrate diffuse
gliomas with remarkable heterogeneity. Using single-cell transcriptomics, we chart a …

[HTML][HTML] New insights about the PDGF/PDGFR signaling pathway as a promising target to develop cancer therapeutic strategies

P Pandey, F Khan, TK Upadhyay, M Seungjoon… - Biomedicine & …, 2023 - Elsevier
Numerous cancers express platelet-derived growth factors (PDGFs) and PDGF receptors
(PDGFRs). By directly stimulating tumour cells in an autocrine manner or by stimulating …

The evolution of single-cell RNA sequencing technology and application: progress and perspectives

S Wang, ST Sun, XY Zhang, HR Ding, Y Yuan… - International journal of …, 2023 - mdpi.com
As an emerging sequencing technology, single-cell RNA sequencing (scRNA-Seq) has
become a powerful tool for describing cell subpopulation classification and cell …

Single-cell analysis reveals prognostic fibroblast subpopulations linked to molecular and immunological subtypes of lung cancer

CJ Hanley, S Waise, MJ Ellis, MA Lopez… - Nature …, 2023 - nature.com
Fibroblasts are poorly characterised cells that variably impact tumour progression. Here, we
use single cell RNA-sequencing, multiplexed immunohistochemistry and digital cytometry …

Precision cancer medicine: Concepts, current practice, and future developments

A Edsjö, L Holmquist, B Geoerger… - Journal of internal …, 2023 - Wiley Online Library
Precision cancer medicine is a multidisciplinary team effort that requires involvement and
commitment of many stakeholders including the society at large. Building on the success of …

Cancer cell states: Lessons from ten years of single-cell RNA-sequencing of human tumors

I Tirosh, ML Suva - Cancer Cell, 2024 - cell.com
Human tumors are intricate ecosystems composed of diverse genetic clones and malignant
cell states that evolve in a complex tumor micro-environment. Single-cell RNA-sequencing …

Single-cell gene regulatory network prediction by explainable AI

P Keyl, P Bischoff, G Dernbach… - Nucleic Acids …, 2023 - academic.oup.com
The molecular heterogeneity of cancer cells contributes to the often partial response to
targeted therapies and relapse of disease due to the escape of resistant cell populations …