Exosomal cargos-mediated metabolic reprogramming in tumor microenvironment
S Tan, Y Yang, W Yang, Y Han, L Huang… - Journal of Experimental …, 2023 - Springer
Metabolic reprogramming is one of the hallmarks of cancer. As nutrients are scarce in the
tumor microenvironment (TME), tumor cells adopt multiple metabolic adaptations to meet …
tumor microenvironment (TME), tumor cells adopt multiple metabolic adaptations to meet …
Systems biology of angiogenesis signaling: Computational models and omics
Angiogenesis is a highly regulated multiscale process that involves a plethora of cells, their
cellular signal transduction, activation, proliferation, differentiation, as well as their …
cellular signal transduction, activation, proliferation, differentiation, as well as their …
Boolean modeling reveals that cyclic attractors in macrophage polarization serve as reservoirs of states to balance external perturbations from the tumor …
UAP de León, A Vázquez-Jiménez… - Frontiers in …, 2022 - frontiersin.org
Cyclic attractors generated from Boolean models may explain the adaptability of a cell in
response to a dynamical complex tumor microenvironment. In contrast to this idea, we …
response to a dynamical complex tumor microenvironment. In contrast to this idea, we …
Data integration in logic-based models of biological mechanisms
BA Hall, A Niarakis - Current Opinion in Systems Biology, 2021 - Elsevier
Discrete, logic-based models are increasingly used to describe biological mechanisms.
Initially introduced to study gene regulation, these models evolved to cover various …
Initially introduced to study gene regulation, these models evolved to cover various …
Modeling signaling pathways in biology with MaBoSS: From one single cell to a dynamic population of heterogeneous interacting cells
As a result of the development of experimental technologies and the accumulation of data,
biological and molecular processes can be described as complex networks of signaling …
biological and molecular processes can be described as complex networks of signaling …
Uncoding the interdependency of tumor microenvironment and macrophage polarization: insights from a continuous network approach
U Avila-Ponce de León, A Vázquez-Jiménez… - Frontiers in …, 2023 - frontiersin.org
The balance between pro-and anti-inflammatory immune system responses is crucial to
preventing complex diseases like cancer. Macrophages are essential immune cells that …
preventing complex diseases like cancer. Macrophages are essential immune cells that …
Effective Reversal of Macrophage Polarization by Inhibitory Combinations Predicted by a Boolean Protein–Protein Interaction Model
Simple Summary Understanding the effects of the tumor microenvironment is an essential
step to advance treatments for cancer, but it is also one that is problematic to reproduce in …
step to advance treatments for cancer, but it is also one that is problematic to reproduce in …
Agent-based vs. equation-based multi-scale modeling for macrophage polarization
SB Minucci, RL Heise, AM Reynolds - Plos one, 2024 - journals.plos.org
Macrophages show high plasticity and result in heterogenic subpopulations or polarized
states identified by specific cellular markers. These immune cells are typically characterized …
states identified by specific cellular markers. These immune cells are typically characterized …
An agent-based model of monocyte differentiation into tumour-associated macrophages in chronic lymphocytic leukemia
N Verstraete, M Marku, M Domagala, H Arduin… - Iscience, 2023 - cell.com
Monocyte-derived macrophages help maintain tissue homeostasis and defend the organism
against pathogens. In tumors, recent studies have uncovered complex macrophage …
against pathogens. In tumors, recent studies have uncovered complex macrophage …
[PDF][PDF] Dissecting Cellular Phenotypes in the Tumour Microenvironment through Gene Regulatory Networks: Inference, Analysis and Dynamical Modelling
Gene regulatory networks (GRNs) and mathematical modelling are critical for understanding
the complex regulatory mechanisms that underlie tumour development and progression …
the complex regulatory mechanisms that underlie tumour development and progression …