Machine learning for chemical reactions

M Meuwly - Chemical Reviews, 2021 - ACS Publications
Machine learning (ML) techniques applied to chemical reactions have a long history. The
present contribution discusses applications ranging from small molecule reaction dynamics …

CHARMM at 45: Enhancements in accessibility, functionality, and speed

W Hwang, SL Austin, A Blondel… - The Journal of …, 2024 - ACS Publications
Since its inception nearly a half century ago, CHARMM has been playing a central role in
computational biochemistry and biophysics. Commensurate with the developments in …

Choosing the right molecular machine learning potential

M Pinheiro, F Ge, N Ferré, PO Dral, M Barbatti - Chemical Science, 2021 - pubs.rsc.org
Quantum-chemistry simulations based on potential energy surfaces of molecules provide
invaluable insight into the physicochemical processes at the atomistic level and yield such …

Representations of molecules and materials for interpolation of quantum-mechanical simulations via machine learning

MF Langer, A Goeßmann, M Rupp - npj Computational Materials, 2022 - nature.com
Computational study of molecules and materials from first principles is a cornerstone of
physics, chemistry, and materials science, but limited by the cost of accurate and precise …

MLatom 2: an integrative platform for atomistic machine learning

PO Dral, F Ge, BX Xue, YF Hou, M Pinheiro Jr… - New Horizons in …, 2022 - Springer
Atomistic machine learning (AML) simulations are used in chemistry at an everincreasing
pace. A large number of AML models has been developed, but their implementations are …

A look inside the black box of machine learning photodynamics simulations

J Li, SA Lopez - Accounts of Chemical Research, 2022 - ACS Publications
Conspectus Photochemical reactions are of great importance in chemistry, biology, and
materials science because they take advantage of a renewable energy source, mild reaction …

PESPIP: Software to fit complex molecular and many-body potential energy surfaces with permutationally invariant polynomials

PL Houston, C Qu, Q Yu, R Conte, A Nandi… - The Journal of …, 2023 - pubs.aip.org
We wish to describe a potential energy surface by using a basis of permutationally invariant
polynomials whose coefficients will be determined by numerical regression so as to …

Explicit learning of derivatives with the kreg and pkreg models on the example of accurate representation of molecular potential energy surfaces

YF Hou, F Ge, PO Dral - Journal of Chemical Theory and …, 2023 - ACS Publications
The KREG and pKREG models were proven to enable accurate learning of
multidimensional single-molecule surfaces of quantum chemical properties such as ground …

Improving potential energy surfaces using measured Feshbach resonance states

KP Horn, LI Vazquez-Salazar, CP Koch, M Meuwly - Science Advances, 2024 - science.org
The structure and dynamics of a molecular system is governed by its potential energy
surface (PES), representing the total energy as a function of the nuclear coordinates …

Transfer learning for affordable and high-quality tunneling splittings from instanton calculations

S Käser, JO Richardson… - Journal of Chemical Theory …, 2022 - ACS Publications
The combination of transfer learning (TL) a low-level potential energy surface (PES) to a
higher level of electronic structure theory together with ring-polymer instanton (RPI) theory is …