A comprehensive survey of clustering algorithms

D Xu, Y Tian - Annals of data science, 2015 - Springer
Data analysis is used as a common method in modern science research, which is across
communication science, computer science and biology science. Clustering, as the basic …

Survey of clustering algorithms

R Xu, D Wunsch - IEEE Transactions on neural networks, 2005 - ieeexplore.ieee.org
Data analysis plays an indispensable role for understanding various phenomena. Cluster
analysis, primitive exploration with little or no prior knowledge, consists of research …

Evaluation of AlphaFold-Multimer prediction on multi-chain protein complexes

W Zhu, A Shenoy, P Kundrotas, A Elofsson - Bioinformatics, 2023 - academic.oup.com
Motivation Despite near-experimental accuracy on single-chain predictions, there is still
scope for improvement among multimeric predictions. Methods like AlphaFold-Multimer and …

Identification of cell types from single-cell transcriptomes using a novel clustering method

C Xu, Z Su - Bioinformatics, 2015 - academic.oup.com
Motivation: The recent advance of single-cell technologies has brought new insights into
complex biological phenomena. In particular, genome-wide single-cell measurements such …

Querying k-truss community in large and dynamic graphs

X Huang, H Cheng, L Qin, W Tian, JX Yu - Proceedings of the 2014 ACM …, 2014 - dl.acm.org
Community detection which discovers densely connected structures in a network has been
studied a lot. In this paper, we study online community search which is practically useful but …

CAMERA: an integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets

C Kuhl, R Tautenhahn, C Bottcher, TR Larson… - Analytical …, 2012 - ACS Publications
Liquid chromatography coupled to mass spectrometry is routinely used for metabolomics
experiments. In contrast to the fairly routine and automated data acquisition steps …

The database of cross-linguistic colexifications, reproducible analysis of cross-linguistic polysemies

C Rzymski, T Tresoldi, SJ Greenhill, MS Wu… - Scientific data, 2020 - nature.com
Advances in computer-assisted linguistic research have been greatly influential in resha**
linguistic research. With the increasing availability of interconnected datasets created and …

An automated method for finding molecular complexes in large protein interaction networks

GD Bader, CWV Hogue - BMC bioinformatics, 2003 - Springer
Background Recent advances in proteomics technologies such as two-hybrid, phage
display and mass spectrometry have enabled us to create a detailed map of biomolecular …

Springer series in statistics

P Bickel, P Diggle, S Fienberg, U Gather, I Olkin… - Principles and Theory …, 2009 - Springer
The idea for this book came from the time the authors spent at the Statistics and Applied
Mathematical Sciences Institute (SAMSI) in Research Triangle Park in North Carolina …

Reconstruction and estimation in the planted partition model

E Mossel, J Neeman, A Sly - Probability Theory and Related Fields, 2015 - Springer
The planted partition model (also known as the stochastic blockmodel) is a classical cluster-
exhibiting random graph model that has been extensively studied in statistics, physics, and …