Phantasus, a web application for visual and interactive gene expression analysis

M Kleverov, D Zenkova, V Kamenev, M Sablina… - Elife, 2024 - elifesciences.org
Transcriptomic profiling became a standard approach to quantify a cell state, which led to
the accumulation of huge amount of public gene expression datasets. However, both reuse …

MYTHO is a novel regulator of skeletal muscle autophagy and integrity

JP Leduc-Gaudet, A Franco-Romero, M Cefis… - Nature …, 2023 - nature.com
Autophagy is a critical process in the regulation of muscle mass, function and integrity. The
molecular mechanisms regulating autophagy are complex and still partly understood. Here …

Integrated multi-omics analysis of Alzheimer's disease shows molecular signatures associated with disease progression and potential therapeutic targets

P Kodam, R Sai Swaroop, SS Pradhan… - Scientific reports, 2023 - nature.com
Alzheimer's disease (AD) is a progressive neurodegenerative disease characterized by the
formation of amyloid plaques implicated in neuronal death. Genetics, age, and sex are the …

Identification of immune-associated biomarkers of diabetes nephropathy tubulointerstitial injury based on machine learning: A bioinformatics multi-chip integrated …

L Wang, J Su, Z Liu, S Ding, Y Li, B Hou, Y Hu, Z Dong… - BioData Mining, 2024 - Springer
Background Diabetic nephropathy (DN) is a major microvascular complication of diabetes
and has become the leading cause of end-stage renal disease worldwide. A considerable …

Integrated Bioinformatics-Based Identification and Validation of Neuroinflammation-Related Hub Genes in Primary Open-Angle Glaucoma

Z Ullah, Y Tao, J Huang - International Journal of Molecular …, 2024 - pmc.ncbi.nlm.nih.gov
Glaucoma is a leading cause of permanent blindness, affecting 80 million people worldwide.
Recent studies have emphasized the importance of neuroinflammation in the early stages of …

Hypoxia-immune-related microenvironment prognostic signature for osteosarcoma

W Zhang, P Lyu, D Andreev, Y Jia, F Zhang… - Frontiers in Cell and …, 2022 - frontiersin.org
Introduction: Increasing evidences have shown that hypoxia and the immune
microenvironment play vital roles in the development of osteosarcoma. However, reliable …

MicroRNA-gene regulatory network of TLR signaling in neuroinflammation-induced Parkinson's disease: a bioinformatics approach

G Singh, DK Khatri - Network Modeling Analysis in Health Informatics and …, 2024 - Springer
Parkinson's disease (PD) is the second-most common neurodegenerative disease, affecting
10 million people worldwide. Neuroinflammation is one of the major pathologic processes in …

Bioengineered Model of Human LGMD2B Skeletal Muscle Reveals Roles of Intracellular Calcium Overload in Contractile and Metabolic Dysfunction in …

A Khodabukus, NK Prabhu, T Roberts… - Advanced …, 2024 - Wiley Online Library
Dysferlin is a multi‐functional protein that regulates membrane resealing, calcium
homeostasis, and lipid metabolism in skeletal muscle. Genetic loss of dysferlin results in …

CRYL1 is a Potential Prognostic Biomarker of Clear Cell Renal Cell Carcinoma Correlated with Immune Infiltration and Cuproptosis

P Li, Q Xu, K Liu, J Ye - Technology in Cancer Research & …, 2024 - journals.sagepub.com
Background Clear cell renal cell carcinoma (ccRCC) is a widespread urogenital neoplasm.
However, the therapeutic efficacy of these methods is unsatisfactory. In-depth screening of …

Downregulation of stromal syntenin sustains AML development

R Leblanc, R Ghossoub, A Goubard… - EMBO molecular …, 2023 - embopress.org
The crosstalk between cancer and stromal cells plays a critical role in tumor progression.
Syntenin is a small scaffold protein involved in the regulation of intercellular communication …