Satellite DNA: an evolving topic

MA Garrido-Ramos - Genes, 2017 - mdpi.com
Satellite DNA represents one of the most fascinating parts of the repetitive fraction of the
eukaryotic genome. Since the discovery of highly repetitive tandem DNA in the 1960s, a lot …

Coevolution between transposable elements and recombination

TV Kent, J Uzunović, SI Wright - … Transactions of the …, 2017 - royalsocietypublishing.org
One of the most striking patterns of genome structure is the tight, typically negative,
association between transposable elements (TEs) and meiotic recombination rates. While …

The structure, function and evolution of a complete human chromosome 8

GA Logsdon, MR Vollger, PH Hsieh, Y Mao… - Nature, 2021 - nature.com
The complete assembly of each human chromosome is essential for understanding human
biology and evolution,. Here we use complementary long-read sequencing technologies to …

TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads

P Novák, L Ávila Robledillo, A Koblížková… - Nucleic acids …, 2017 - academic.oup.com
Satellite DNA is one of the major classes of repetitive DNA, characterized by tandemly
arranged repeat copies that form contiguous arrays up to megabases in length. This type of …

High-throughput analysis of the satellitome illuminates satellite DNA evolution

FJ Ruiz-Ruano, MD López-León, J Cabrero… - Scientific reports, 2016 - nature.com
Satellite DNA (satDNA) is a major component yet the great unknown of eukaryote genomes
and clearly underrepresented in genome sequencing projects. Here we show the high …

Repetitive sequences in plant nuclear DNA: types, distribution, evolution and function

S Mehrotra, V Goyal - Genomics, proteomics & bioinformatics, 2014 - academic.oup.com
Repetitive DNA sequences are a major component of eukaryotic genomes and may account
for up to 90% of the genome size. They can be divided into minisatellite, microsatellite and …

Centromere repeats: hidden gems of the genome

G Hartley, RJ O'Neill - Genes, 2019 - mdpi.com
Satellite DNAs are now regarded as powerful and active contributors to genomic and
chromosomal evolution. Paired with mobile transposable elements, these repetitive …

Satellite DNA in plants: more than just rubbish

MA Garrido-Ramos - Cytogenetic and Genome Research, 2015 - karger.com
For decades, satellite DNAs have been the hidden part of genomes. Initially considered as
junk DNA, there is currently an increasing appreciation of the functional significance of …

DNA satellite and chromatin organization at mouse centromeres and pericentromeres

J Packiaraj, J Thakur - Genome Biology, 2024 - Springer
Background Centromeres are essential for faithful chromosome segregation during mitosis
and meiosis. However, the organization of satellite DNA and chromatin at mouse …

[HTML][HTML] Retrotransposons in plant genomes: structure, identification, and classification through bioinformatics and machine learning

S Orozco-Arias, G Isaza, R Guyot - International journal of molecular …, 2019 - mdpi.com
Transposable elements (TEs) are genomic units able to move within the genome of virtually
all organisms. Due to their natural repetitive numbers and their high structural diversity, the …