Machine learning for antimicrobial peptide identification and design

F Wan, F Wong, JJ Collins… - Nature Reviews …, 2024 - nature.com
Artificial intelligence (AI) and machine learning (ML) models are being deployed in many
domains of society and have recently reached the field of drug discovery. Given the …

Immunoinformatics and vaccine development: an overview

AN Oli, WO Obialor, MO Ifeanyichukwu… - ImmunoTargets and …, 2020 - Taylor & Francis
The use of vaccines have resulted in a remarkable improvement in global health. It has
saved several lives, reduced treatment costs and raised the quality of animal and human …

[HTML][HTML] Targeting aquaporin-4 subcellular localization to treat central nervous system edema

P Kitchen, MM Salman, AM Halsey, C Clarke-Bland… - Cell, 2020 - cell.com
Swelling of the brain or spinal cord (CNS edema) affects millions of people every year. All
potential pharmacological interventions have failed in clinical trials, meaning that symptom …

PEP-FOLD4: A pH-dependent force field for peptide structure prediction in aqueous solution

J Rey, S Murail, S de Vries, P Derreumaux… - Nucleic acids …, 2023 - academic.oup.com
Accurate and fast structure prediction of peptides of less 40 amino acids in aqueous solution
has many biological applications, but their conformations are pH-and salt concentration …

Benchmarking AlphaFold2 on peptide structure prediction

EF McDonald, T Jones, L Plate, J Meiler, A Gulsevin - Structure, 2023 - cell.com
Recent advancements in computational tools have allowed protein structure prediction with
high accuracy. Computational prediction methods have been used for modeling many …

HPEPDOCK: a web server for blind peptide–protein docking based on a hierarchical algorithm

P Zhou, B **, H Li, SY Huang - Nucleic acids research, 2018 - academic.oup.com
Protein–peptide interactions are crucial in many cellular functions. Therefore, determining
the structure of protein–peptide complexes is important for understanding the molecular …

Hydrogen-bonds mediate liquid-liquid phase separation of mussel derived adhesive peptides

Q Guo, G Zou, X Qian, S Chen, H Gao, J Yu - Nature Communications, 2022 - nature.com
Marine mussels achieve strong underwater adhesion by depositing mussel foot proteins
(Mfps) that form coacervates during the protein secretion. However, the molecular …

In silico design of a novel multi-epitope vaccine against HCV infection through immunoinformatics approaches

S Ahmad, FM Demneh, B Rehman, TN Almanaa… - International journal of …, 2024 - Elsevier
Infection with the hepatitis C virus (HCV) is one of the causes of liver cancer, which is the
world's sixth most prevalent and third most lethal cancer. The current treatments do not …

Pragmatic coarse-graining of proteins: models and applications

L Borges-Araújo, I Patmanidis, AP Singh… - Journal of Chemical …, 2023 - ACS Publications
The molecular details involved in the folding, dynamics, organization, and interaction of
proteins with other molecules are often difficult to assess by experimental techniques …

Material-specific binding peptides empower sustainable innovations in plant health, biocatalysis, medicine and microplastic quantification

M Mao, L Ahrens, J Luka, F Contreras… - Chemical Society …, 2024 - pubs.rsc.org
Material-binding peptides (MBPs) have emerged as a diverse and innovation-enabling class
of peptides in applications such as plant-/human health, immobilization of catalysts …