Computational models for active matter

MR Shaebani, A Wysocki, RG Winkler… - Nature Reviews …, 2020 - nature.com
Active matter, which ranges from molecular motors to groups of animals, exists at different
length scales and timescales, and various computational models have been proposed to …

Diffusive transport without detailed balance in motile bacteria: does microbiology need statistical physics?

ME Cates - Reports on Progress in Physics, 2012 - iopscience.iop.org
Microbiology is the science of microbes, particularly bacteria. Many bacteria are motile: they
are capable of self-propulsion. Among these, a significant class execute so-called run-and …

The 2020 motile active matter roadmap

G Gompper, RG Winkler, T Speck… - Journal of Physics …, 2020 - iopscience.iop.org
Activity and autonomous motion are fundamental in living and engineering systems. This
has stimulated the new field of'active matter'in recent years, which focuses on the physical …

Structure and dynamics of a phase-separating active colloidal fluid

GS Redner, MF Hagan, A Baskaran - Biophysical Journal, 2013 - cell.com
We examine a minimal model for an active colloidal fluid in the form of self-propelled
Brownian spheres that interact purely through excluded volume. Despite the absence of an …

[책][B] Mathematical modeling of biological pattern formation

A Deutsch, S Dormann - 2005 - Springer
In this chapter we have presented mathematical modeling approaches to biological pattern
formation. While reaction-diffusion models are appropriate to describe the spatio-temporal …

Interrupted motility induced phase separation in aligning active colloids

MN Van Der Linden, LC Alexander, DGAL Aarts… - Physical review …, 2019 - APS
Switching on high activity in a relatively dense system of active Janus colloids, we observe
fast clustering, followed by cluster aggregation towards full phase separation. The phase …

Pattern formation in self-propelled particles with density-dependent motility

FDC Farrell, MC Marchetti, D Marenduzzo, J Tailleur - Physical review letters, 2012 - APS
We study the behavior of interacting self-propelled particles, whose self-propulsion speed
decreases with their local density. By combining direct simulations of the microscopic model …

Dynamics of self-propelled particles under strong confinement

Y Fily, A Baskaran, MF Hagan - Soft matter, 2014 - pubs.rsc.org
We develop a statistical theory for the dynamics of non-aligning, non-interacting self-
propelled particles confined in a convex box in two dimensions. We find that when the size …

Freezing a flock: Motility-induced phase separation in polar active liquids

D Geyer, D Martin, J Tailleur, D Bartolo - Physical Review X, 2019 - APS
Combining model experiments and theory, we investigate the dense phases of polar active
matter beyond the conventional flocking picture. We show that above a critical density flocks …

Spontaneous segregation of self-propelled particles with different motilities

SR McCandlish, A Baskaran, MF Hagan - Soft Matter, 2012 - pubs.rsc.org
We study mixtures of self-propelled and passive rod-like particles in two dimensions using
Brownian dynamics simulations. The simulations demonstrate that the two species …