The structure and function of major plant metabolite modifications

S Wang, S Alseekh, AR Fernie, J Luo - Molecular Plant, 2019 - cell.com
Plants produce a myriad of structurally and functionally diverse metabolites that play many
different roles in plant growth and development and in plant response to continually …

Effect-directed analysis supporting monitoring of aquatic environments—an in-depth overview

W Brack, S Ait-Aissa, RM Burgess, W Busch… - Science of the Total …, 2016 - Elsevier
Aquatic environments are often contaminated with complex mixtures of chemicals that may
pose a risk to ecosystems and human health. This contamination cannot be addressed with …

MolNetEnhancer: enhanced molecular networks by integrating metabolome mining and annotation tools

M Ernst, KB Kang, AM Caraballo-Rodríguez… - Metabolites, 2019 - mdpi.com
Metabolomics has started to embrace computational approaches for chemical interpretation
of large data sets. Yet, metabolite annotation remains a key challenge. Recently, molecular …

MetFrag relaunched: incorporating strategies beyond in silico fragmentation

C Ruttkies, EL Schymanski, S Wolf, J Hollender… - Journal of …, 2016 - Springer
Background The in silico fragmenter MetFrag, launched in 2010, was one of the first
approaches combining compound database searching and fragmentation prediction for …

Metabolomics by gas chromatography–mass spectrometry: Combined targeted and untargeted profiling

O Fiehn - Current protocols in molecular biology, 2016 - Wiley Online Library
Gas chromatography–mass spectrometry (GC‐MS)–based metabolomics is ideal for
identifying and quantitating small‐molecule metabolites (< 650 Da), including small acids …

Hydrogen rearrangement rules: computational MS/MS fragmentation and structure elucidation using MS-FINDER software

H Tsugawa, T Kind, R Nakabayashi… - Analytical …, 2016 - ACS Publications
Compound identification from accurate mass MS/MS spectra is a bottleneck for untargeted
metabolomics. In this study, we propose nine rules of hydrogen rearrangement (HR) during …

Topic modeling for untargeted substructure exploration in metabolomics

JJJ van Der Hooft, J Wandy… - Proceedings of the …, 2016 - National Acad Sciences
The potential of untargeted metabolomics to answer important questions across the life
sciences is hindered because of a paucity of computational tools that enable extraction of …

Accelerating metabolite identification in natural product research: toward an ideal combination of liquid chromatography–high-resolution tandem mass spectrometry …

JL Wolfender, JM Nuzillard, JJJ Van Der Hooft… - Analytical …, 2018 - ACS Publications
Natural product research aims to characterize specialized metabolites from various living
organisms and assess their biological properties from either a chemical ecology or drug …

Computational metabolomics: a framework for the million metabolome

K Uppal, DI Walker, K Liu, S Li, YM Go… - Chemical research in …, 2016 - ACS Publications
“Sola dosis facit venenum.” These words of Paracelsus,“the dose makes the poison”, can
lead to a cavalier attitude concerning potential toxicities of the vast array of low abundance …

Ozonation of lake water and wastewater: Identification of carbonous and nitrogenous carbonyl-containing oxidation byproducts by non-target screening

J Houska, T Manasfi, I Gebhardt… - Water …, 2023 - research-collection.ethz.ch
Ozonation of drinking water and wastewater is accompanied by the formation of disinfection
byproducts (DBPs) such as low molecular weight aldehydes and ketones from the reactions …