Deep learning methods for biomedical named entity recognition: a survey and qualitative comparison
The biomedical literature is growing rapidly, and the extraction of meaningful information
from the large amount of literature is increasingly important. Biomedical named entity …
from the large amount of literature is increasingly important. Biomedical named entity …
Community challenges in biomedical text mining over 10 years: success, failure and the future
CC Huang, Z Lu - Briefings in bioinformatics, 2016 - academic.oup.com
One effective way to improve the state of the art is through competitions. Following the
success of the Critical Assessment of protein Structure Prediction (CASP) in bioinformatics …
success of the Critical Assessment of protein Structure Prediction (CASP) in bioinformatics …
HunFlair: an easy-to-use tool for state-of-the-art biomedical named entity recognition
Named entity recognition (NER) is an important step in biomedical information extraction
pipelines. Tools for NER should be easy to use, cover multiple entity types, be highly …
pipelines. Tools for NER should be easy to use, cover multiple entity types, be highly …
A survey on event extraction for natural language understanding: Riding the biomedical literature wave
Motivation: The scientific literature embeds an enormous amount of relational knowledge,
encompassing interactions between biomedical entities, like proteins, drugs, and symptoms …
encompassing interactions between biomedical entities, like proteins, drugs, and symptoms …
[BOK][B] Healthcare data analytics
CK Reddy, CC Aggarwal - 2015 - books.google.com
Supplying a comprehensive overview of healthcare analytics research, Healthcare Data
Analytics provides an understanding of the analytical techniques currently available to solve …
Analytics provides an understanding of the analytical techniques currently available to solve …
Overview of the cancer genetics and pathway curation tasks of bionlp shared task 2013
Background Since their introduction in 2009, the BioNLP Shared Task events have been
instrumental in advancing the development of methods and resources for the automatic …
instrumental in advancing the development of methods and resources for the automatic …
HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools
Motivation With the exponential growth of the life sciences literature, biomedical text mining
(BTM) has become an essential technology for accelerating the extraction of insights from …
(BTM) has become an essential technology for accelerating the extraction of insights from …
Automatic semantic classification of scientific literature according to the hallmarks of cancer
Motivation: The hallmarks of cancer have become highly influential in cancer research. They
reduce the complexity of cancer into 10 principles (eg resisting cell death and sustaining …
reduce the complexity of cancer into 10 principles (eg resisting cell death and sustaining …
DocEE: A large-scale and fine-grained benchmark for document-level event extraction
Event extraction aims to identify an event and then extract the arguments participating in the
event. Despite the great success in sentencelevel event extraction, events are more …
event. Despite the great success in sentencelevel event extraction, events are more …
[PDF][PDF] TEES 2.1: Automated annotation scheme learning in the BioNLP 2013 Shared Task
We participate in the BioNLP 2013 Shared Task with Turku Event Extraction System (TEES)
version 2.1. TEES is a support vector machine (SVM) based text mining system for the …
version 2.1. TEES is a support vector machine (SVM) based text mining system for the …