Application of single nucleotide polymorphisms to non‐model species: a technical review

MR Garvin, K Saitoh, AJ Gharrett - Molecular Ecology …, 2010 - Wiley Online Library
Single nucleotide polymorphisms (SNPs) have gained wide use in humans and model
species and are becoming the marker of choice for applications in other species …

The Resilient Dairy Genome Project—A general overview of methods and objectives related to feed efficiency and methane emissions

N van Staaveren, HR de Oliveira, K Houlahan… - Journal of dairy …, 2024 - Elsevier
ABSTRACT The Resilient Dairy Genome Project (RDGP) is an international large-scale
applied research project that aims to generate genomic tools to breed more resilient dairy …

Factors affecting accuracy from genomic selection in populations derived from multiple inbred lines: a barley case study

S Zhong, JCM Dekkers, RL Fernando, JL Jannink - Genetics, 2009 - academic.oup.com
We compared the accuracies of four genomic-selection prediction methods as affected by
marker density, level of linkage disequilibrium (LD), quantitative trait locus (QTL) number …

Linkage disequilibrium and persistence of phase in Holstein–Friesian, Jersey and Angus cattle

APW De Roos, BJ Hayes, RJ Spelman, ME Goddard - Genetics, 2008 - academic.oup.com
When a genetic marker and a quantitative trait locus (QTL) are in linkage disequilibrium (LD)
in one population, they may not be in LD in another population or their LD phase may be …

A genome wide survey of SNP variation reveals the genetic structure of sheep breeds

JW Kijas, D Townley, BP Dalrymple, MP Heaton… - PloS one, 2009 - journals.plos.org
The genetic structure of sheep reflects their domestication and subsequent formation into
discrete breeds. Understanding genetic structure is essential for achieving genetic …

Genome-wide linkage disequilibrium and genetic diversity in five populations of Australian domestic sheep

HA Al-Mamun, S a Clark, P Kwan, C Gondro - Genetics Selection …, 2015 - Springer
Background Knowledge of the genetic structure and overall diversity of livestock species is
important to maximise the potential of genome-wide association studies and genomic …

Insights into the genetic history of French cattle from dense SNP data on 47 worldwide breeds

M Gautier, D Laloë, K Moazami-Goudarzi - PloS one, 2010 - journals.plos.org
Background Modern cattle originate from populations of the wild extinct aurochs through a
few domestication events which occurred about 8,000 years ago. Newly domesticated …

Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel

MS Khatkar, FW Nicholas, AR Collins, KR Zenger… - BMC genomics, 2008 - Springer
Background The extent of linkage disequilibrium (LD) within a population determines the
number of markers that will be required for successful association map** and marker …

Genetic Diversity and Signatures of Selection for Thermal Stress in Cattle and Other Two Bos Species Adapted to Divergent Climatic Conditions

PHF Freitas, Y Wang, P Yan, HR Oliveira… - Frontiers in …, 2021 - frontiersin.org
Understanding the biological mechanisms of climatic adaptation is of paramount importance
for the optimization of breeding programs and conservation of genetic resources. The aim of …

An assessment of population structure in eight breeds of cattle using a whole genome SNP panel

SD McKay, RD Schnabel, BM Murdoch… - BMC genetics, 2008 - Springer
Background Analyses of population structure and breed diversity have provided insight into
the origin and evolution of cattle. Previously, these studies have used a low density of …