Computational systems biology
H Kitano - Nature, 2002 - nature.com
To understand complex biological systems requires the integration of experimental and
computational research—in other words a systems biology approach. Computational …
computational research—in other words a systems biology approach. Computational …
OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans
The adoption of powerful software tools and computational methods from the software
industry by the scientific research community has resulted in a renewed interest in …
industry by the scientific research community has resulted in a renewed interest in …
[HTML][HTML] Neural signal propagation atlas of Caenorhabditis elegans
Establishing how neural function emerges from network properties is a fundamental problem
in neuroscience. Here, to better understand the relationship between the structure and the …
in neuroscience. Here, to better understand the relationship between the structure and the …
Neural circuit policies enabling auditable autonomy
A central goal of artificial intelligence in high-stakes decision-making applications is to
design a single algorithm that simultaneously expresses generalizability by learning …
design a single algorithm that simultaneously expresses generalizability by learning …
Liquid time-constant networks
We introduce a new class of time-continuous recurrent neural network models. Instead of
declaring a learning system's dynamics by implicit nonlinearities, we construct networks of …
declaring a learning system's dynamics by implicit nonlinearities, we construct networks of …
A circuit for navigation in Caenorhabditis elegans
Caenorhabditis elegans explores its environment by interrupting its forward movement with
occasional turns and reversals. Turns and reversals occur at stable frequencies but irregular …
occasional turns and reversals. Turns and reversals occur at stable frequencies but irregular …
The rich club of the C. elegans neuronal connectome
There is increasing interest in topological analysis of brain networks as complex systems,
with researchers often using neuroimaging to represent the large-scale organization of …
with researchers often using neuroimaging to represent the large-scale organization of …
Optogenetic manipulation of neural activity in freely moving Caenorhabditis elegans
We present an optogenetic illumination system capable of real-time light delivery with high
spatial resolution to specified targets in freely moving Caenorhabditis elegans. A tracking …
spatial resolution to specified targets in freely moving Caenorhabditis elegans. A tracking …
EAT-4, a homolog of a mammalian sodium-dependent inorganic phosphate cotransporter, is necessary for glutamatergic neurotransmission in Caenorhabditis …
RYN Lee, ER Sawin, M Chalfie… - Journal of …, 1999 - Soc Neuroscience
The Caenorhabditis elegans gene eat-4 affects multiple glutamatergic neurotransmission
pathways. We find that eat-4 encodes a protein similar in sequence to a mammalian brain …
pathways. We find that eat-4 encodes a protein similar in sequence to a mammalian brain …
An imbalancing act: gap junctions reduce the backward motor circuit activity to bias C. elegans for forward locomotion
A neural network can sustain and switch between different activity patterns to execute
multiple behaviors. By monitoring the decision making for directional locomotion through …
multiple behaviors. By monitoring the decision making for directional locomotion through …