The Human Pangenome Project: a global resource to map genomic diversity

T Wang, L Antonacci-Fulton, K Howe, HA Lawson… - Nature, 2022 - nature.com
The human reference genome is the most widely used resource in human genetics and is
due for a major update. Its current structure is a linear composite of merged haplotypes from …

Bioremediation through microbes: systems biology and metabolic engineering approach

AK Dangi, B Sharma, RT Hill… - Critical reviews in …, 2019 - Taylor & Francis
Today, environmental pollution is a serious problem, and bioremediation can play an
important role in cleaning contaminated sites. Remediation strategies, such as chemical and …

The ensembl variant effect predictor

W McLaren, L Gil, SE Hunt, HS Riat, GRS Ritchie… - Genome biology, 2016 - Springer
Abstract The Ensembl Variant Effect Predictor is a powerful toolset for the analysis,
annotation, and prioritization of genomic variants in coding and non-coding regions. It …

Ensembl 2017

BL Aken, P Achuthan, W Akanni… - Nucleic acids …, 2017 - academic.oup.com
Abstract Ensembl (www. ensembl. org) is a database and genome browser for enabling
research on vertebrate genomes. We import, analyse, curate and integrate a diverse …

Tracking the origins and drivers of subclonal metastatic expansion in prostate cancer

MKH Hong, G Macintyre, DC Wedge, P Van Loo… - Nature …, 2015 - nature.com
Tumour heterogeneity in primary prostate cancer is a well-established phenomenon.
However, how the subclonal diversity of tumours changes during metastasis and …

Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases

D Marbach, D Lamparter, G Quon, M Kellis, Z Kutalik… - Nature …, 2016 - nature.com
Map** perturbed molecular circuits that underlie complex diseases remains a great
challenge. We developed a comprehensive resource of 394 cell type–and tissue-specific …

Responsible, practical genomic data sharing that accelerates research

JB Byrd, AC Greene, DV Prasad, X Jiang… - Nature Reviews …, 2020 - nature.com
Data sharing anchors reproducible science, but expectations and best practices are often
nebulous. Communities of funders, researchers and publishers continue to grapple with …

BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2

MS Cline, RG Liao, MT Parsons, B Paten… - PLoS …, 2018 - journals.plos.org
The BRCA Challenge is a long-term data-sharing project initiated within the Global Alliance
for Genomics and Health (GA4GH) to aggregate BRCA1 and BRCA2 data to support highly …

Genetic architecture of subcortical brain structures in 38,851 individuals

CL Satizabal, HHH Adams, DP Hibar, CC White… - Nature …, 2019 - nature.com
Subcortical brain structures are integral to motion, consciousness, emotions and learning.
We identified common genetic variation related to the volumes of the nucleus accumbens …

Lifestyle and metabolic factors for nonalcoholic fatty liver disease: Mendelian randomization study

S Yuan, J Chen, X Li, R Fan, B Arsenault, D Gill… - European journal of …, 2022 - Springer
The risk factors for nonalcoholic fatty liver disease (NAFLD) have not been clearly identified.
We conducted a Mendelian randomization (MR) study to explore this. Independent genetic …