A reduction of transcriptional regulation in aquatic oligotrophic microorganisms enhances fitness in nutrient-poor environments

SE Noell, FL Hellweger, B Temperton… - Microbiology and …, 2023 - Am Soc Microbiol
In this review, we consider the regulatory strategies of aquatic oligotrophs, microbial cells
that are adapted to thrive under low-nutrient concentrations in oceans, lakes, and other …

Habitat transition in the evolution of bacteria and archaea

AL Jaffe, CJ Castelle, JF Banfield - Annual Review of …, 2023 - annualreviews.org
Related groups of microbes are widely distributed across Earth's habitats, implying
numerous dispersal and adaptation events over evolutionary time. However, relatively little …

Two decades of bacterial ecology and evolution in a freshwater lake

RR Rohwer, M Kirkpatrick, SL Garcia, M Kellom… - Nature …, 2025 - nature.com
Ecology and evolution are considered distinct processes that interact on contemporary time
scales in microbiomes. Here, to observe these processes in a natural system, we collected a …

Microbial hitchhikers harbouring antimicrobial-resistance genes in the riverine plastisphere

V Zadjelovic, RJ Wright, C Borsetto, J Quartey… - Microbiome, 2023 - Springer
Background The widespread nature of plastic pollution has given rise to wide scientific and
social concern regarding the capacity of these materials to serve as vectors for pathogenic …

Multi-environment ecogenomics analysis of the cosmopolitan phylum Gemmatimonadota

I Mujakić, PJ Cabello-Yeves… - Microbiology …, 2023 - Am Soc Microbiol
Gemmatimonadota is a diverse bacterial phylum commonly found in environments such as
soils, rhizospheres, fresh waters, and sediments. So far, the phylum contains just six cultured …

Flexible genomic island conservation across freshwater and marine Methylophilaceae

P Layoun, M López-Pérez, JM Haro-Moreno… - The ISME …, 2024 - academic.oup.com
The evolutionary trajectory of Methylophilaceae includes habitat transitions from freshwater
sediments to freshwater and marine pelagial that resulted in genome reduction (genome …

The effect of urbanization on planktonic and biofilm bacterial communities in different water bodies of the Danube River in Hungary

KJ Lennert, AK Borsodi, D Anda, G Krett, PB Kós… - Scientific Reports, 2024 - nature.com
Freshwaters play an essential role in providing ecosystem services worldwide, however, the
water quality of different water bodies is strongly influenced by human activities such as …

New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system

MJ Bittner, CC Bannon, E Rowland… - ISME …, 2024 - academic.oup.com
Abstract Vitamin B1 (thiamin, B1) is an essential micronutrient for cells, yet intriguingly in
aquatic systems most bacterioplankton are unable to synthesize it de novo (auxotrophy) …

Understanding the Effect of Different Glucose Concentrations in the Oligotrophic Bacterium Bacillus subtilis BS-G1 through Transcriptomics Analysis

L Chen, C Wang, J Su - Microorganisms, 2023 - mdpi.com
Glucose is an important carbon source for microbial growth, and its content in infertile soils is
essential for the growth of bacteria. Since the mechanism of oligotrophic bacterium …

Freshwater genome-reduced bacteria exhibit pervasive episodes of adaptive stasis

L Serra Moncadas, C Hofer, PA Bulzu… - Nature …, 2024 - nature.com
The emergence of bacterial species is rooted in their inherent potential for continuous
evolution and adaptation to an ever-changing ecological landscape. The adaptive capacity …