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A survey of gene regulatory networks modelling methods: from differential equations, to Boolean and qualitative bioinspired models
Abstract Gene Regulatory Networks (GRNs) represent the interactions among genes
regulating the activation of specific cell functionalities, such as reception of (chemical) …
regulating the activation of specific cell functionalities, such as reception of (chemical) …
Process calculi for biological processes
Abstract Systems biology is a research area devoted to develo** computational
frameworks for modeling biological systems in a holistic fashion. Within this approach, the …
frameworks for modeling biological systems in a holistic fashion. Within this approach, the …
[HTML][HTML] Investigating dynamic causalities in reaction systems
Reaction systems are a qualitative formalism for modeling systems of biochemical reactions
characterized by the non-permanency of the elements: molecules disappear if not produced …
characterized by the non-permanency of the elements: molecules disappear if not produced …
Spatial-temporal modelling and analysis of bacterial colonies with phase variable genes
This article defines a novel spatial-temporal modelling and analysis methodology applied to
a systems biology case study, namely phase variation patterning in bacterial colony growth …
a systems biology case study, namely phase variation patterning in bacterial colony growth …
[HTML][HTML] Minimal probabilistic P systems for modelling ecological systems
In this paper we propose MPP systems as modelling notation for ecological systems, and we
show how they can be used together with simulation and statistical model checking tools to …
show how they can be used together with simulation and statistical model checking tools to …
Running cells with decision-making mechanism: Intelligence decision P System for evacuation simulation
Y Niu, Y Zhang, J Zhang, J **ao - International journal of computers …, 2018 - univagora.ro
Cell migration is a central process which happens along with multicellular organisms'
development and maintenance. The process that cells move to specidic locations in …
development and maintenance. The process that cells move to specidic locations in …
Membrane automata for modeling biomolecular processes
Bioinspired computation models and mechanisms are widely used in various applications,
both in theoretical and practical level. Membrane Computing, a branch of Natural …
both in theoretical and practical level. Membrane Computing, a branch of Natural …
Membranes with boundaries
Active cell components involved in real biological processes have to be close enough to a
membrane in order to be able to pass through it. Rough set theory gives a plausible …
membrane in order to be able to pass through it. Rough set theory gives a plausible …
Using maptrees to characterize topological change
M Worboys - … Theory: 11th International Conference, COSIT 2013 …, 2013 - Springer
This paper further develops the theory of maptrees, introduced in [13]. There exist well-
known methods, based upon combinatorial maps, for topologically complete representations …
known methods, based upon combinatorial maps, for topologically complete representations …
Morphogenetic and homeostatic self-assembled systems
As a natural evolution of developments in membrane computing and self-assembly, the time
appears ripe to hybridize their principles to explore models capable of exhibiting further …
appears ripe to hybridize their principles to explore models capable of exhibiting further …