A review on generative adversarial networks: Algorithms, theory, and applications

J Gui, Z Sun, Y Wen, D Tao, J Ye - IEEE transactions on …, 2021 - ieeexplore.ieee.org
Generative adversarial networks (GANs) have recently become a hot research topic;
however, they have been studied since 2014, and a large number of algorithms have been …

Deep learning: new computational modelling techniques for genomics

G Eraslan, Ž Avsec, J Gagneur, FJ Theis - Nature reviews genetics, 2019 - nature.com
As a data-driven science, genomics largely utilizes machine learning to capture
dependencies in data and derive novel biological hypotheses. However, the ability to extract …

The evolution, evolvability and engineering of gene regulatory DNA

ED Vaishnav, CG de Boer, J Molinet, M Yassour, L Fan… - Nature, 2022 - nature.com
Mutations in non-coding regulatory DNA sequences can alter gene expression, organismal
phenotype and fitness,–. Constructing complete fitness landscapes, in which DNA …

Cell-type-directed design of synthetic enhancers

II Taskiran, KI Spanier, H Dickmänken, N Kempynck… - Nature, 2024 - nature.com
Transcriptional enhancers act as docking stations for combinations of transcription factors
and thereby regulate spatiotemporal activation of their target genes. It has been a long …

Likelihood ratios for out-of-distribution detection

J Ren, PJ Liu, E Fertig, J Snoek… - Advances in neural …, 2019 - proceedings.neurips.cc
Discriminative neural networks offer little or no performance guarantees when deployed on
data not generated by the same process as the training distribution. On such out-of …

Recent progress on generative adversarial networks (GANs): A survey

Z Pan, W Yu, X Yi, A Khan, F Yuan, Y Zheng - IEEE access, 2019 - ieeexplore.ieee.org
Generative adversarial network (GANs) is one of the most important research avenues in the
field of artificial intelligence, and its outstanding data generation capacity has received wide …

Molecular sets (MOSES): a benchmarking platform for molecular generation models

D Polykovskiy, A Zhebrak… - Frontiers in …, 2020 - frontiersin.org
Generative models are becoming a tool of choice for exploring the molecular space. These
models learn on a large training dataset and produce novel molecular structures with similar …

Dirichlet diffusion score model for biological sequence generation

P Avdeyev, C Shi, Y Tan, K Dudnyk… - … on Machine Learning, 2023 - proceedings.mlr.press
Designing biological sequences is an important challenge that requires satisfying complex
constraints and thus is a natural problem to address with deep generative modeling …

Controlling gene expression with deep generative design of regulatory DNA

J Zrimec, X Fu, AS Muhammad, C Skrekas… - Nature …, 2022 - nature.com
Abstract Design of de novo synthetic regulatory DNA is a promising avenue to control gene
expression in biotechnology and medicine. Using mutagenesis typically requires screening …

Generative adversarial networks and its applications in biomedical informatics

L Lan, L You, Z Zhang, Z Fan, W Zhao, N Zeng… - Frontiers in public …, 2020 - frontiersin.org
The basic Generative Adversarial Networks (GAN) model is composed of the input vector,
generator, and discriminator. Among them, the generator and discriminator are implicit …