Microbial diversity in extreme environments

WS Shu, LN Huang - Nature Reviews Microbiology, 2022 - nature.com
A wide array of microorganisms, including many novel, phylogenetically deeply rooted taxa,
survive and thrive in extreme environments. These unique and reduced-complexity …

Detoxification of lignocellulose hydrolysates: biochemical and metabolic engineering toward white biotechnology

AK Chandel, SS Da Silva, OV Singh - BioEnergy Research, 2013 - Springer
Chemical hydrolysis of lignocellulosic biomass (LB) produces a number of inhibitors in
addition to sugars. These inhibitors include lignin-derived phenolics, carbohydrate-derived …

Widespread genetic switches and toxicity resistance proteins for fluoride

JL Baker, N Sudarsan, Z Weinberg, A Roth… - Science, 2012 - science.org
Most riboswitches are metabolite-binding RNA structures located in bacterial messenger
RNAs where they control gene expression. We have discovered a riboswitch class in many …

Covariation of hot spring geochemistry with microbial genomic diversity, function, and evolution

DR Colman, LM Keller, E Arteaga-Pozo… - Nature …, 2024 - nature.com
The geosphere and the microbial biosphere have co-evolved for~ 3.8 Ga, with many lines of
evidence suggesting a hydrothermal habitat for life's origin. However, the extent that …

The microbiome of Brazilian mangrove sediments as revealed by metagenomics

FD Andreote, DJ Jiménez, D Chaves, ACF Dias… - PloS one, 2012 - journals.plos.org
Here we embark in a deep metagenomic survey that revealed the taxonomic and potential
metabolic pathways aspects of mangrove sediment microbiology. The extraction of DNA …

High speciation rate of niche specialists in hot springs

Q He, S Wang, K Feng, ST Michaletz, W Hou… - The ISME …, 2023 - academic.oup.com
Ecological and evolutionary processes simultaneously regulate microbial diversity, but the
evolutionary processes and their driving forces remain largely unexplored. Here we …

A comprehensive census of microbial diversity in hot springs of Tengchong, Yunnan Province China using 16S rRNA gene pyrosequencing

W Hou, S Wang, H Dong, H Jiang, BR Briggs… - PloS one, 2013 - journals.plos.org
The Rehai and Ruidian geothermal fields, located in Tengchong County, Yunnan Province,
China, host a variety of geochemically distinct hot springs. In this study, we report a …

Thermophiles in the genomic era: Biodiversity, science, and applications

MS Urbieta, ER Donati, KG Chan, S Shahar… - Biotechnology …, 2015 - Elsevier
Thermophiles and hyperthermophiles are present in various regions of the Earth, including
volcanic environments, hot springs, mud pots, fumaroles, geysers, coastal thermal springs …

The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem

WP Inskeep, ZJ Jay, SG Tringe, MJ Herrgård… - Frontiers in …, 2013 - frontiersin.org
The Yellowstone geothermal complex contains over 10,000 diverse geothermal features that
host numerous phylogenetically deeply rooted and poorly understood archaea, bacteria …

Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage

JA Dodsworth, PC Blainey, SK Murugapiran… - Nature …, 2013 - nature.com
OP9 is a yet-uncultivated bacterial lineage found in geothermal systems, petroleum
reservoirs, anaerobic digesters and wastewater treatment facilities. Here we use single-cell …