BELB: a biomedical entity linking benchmark
Motivation Biomedical entity linking (BEL) is the task of grounding entity mentions to a
knowledge base (KB). It plays a vital role in information extraction pipelines for the life …
knowledge base (KB). It plays a vital role in information extraction pipelines for the life …
Bring your own kg: Self-supervised program synthesis for zero-shot kgqa
We present BYOKG, a universal question-answering (QA) system that can operate on any
knowledge graph (KG), requires no human-annotated training data, and can be ready to use …
knowledge graph (KG), requires no human-annotated training data, and can be ready to use …
[HTML][HTML] A comprehensive evaluation of biomedical entity linking models
Biomedical entity linking (BioEL) is the process of connecting entities referenced in
documents to entries in biomedical databases such as the Unified Medical Language …
documents to entries in biomedical databases such as the Unified Medical Language …
xMEN: a modular toolkit for cross-lingual medical entity normalization
Objective To improve performance of medical entity normalization across many languages,
especially when fewer language resources are available compared to English. Materials …
especially when fewer language resources are available compared to English. Materials …
Maverick: Efficient and accurate coreference resolution defying recent trends
Large autoregressive generative models have emerged as the cornerstone for achieving the
highest performance across several Natural Language Processing tasks. However, the urge …
highest performance across several Natural Language Processing tasks. However, the urge …
CoRTEx: contrastive learning for representing terms via explanations with applications on constructing biomedical knowledge graphs
Abstract Objectives Biomedical Knowledge Graphs play a pivotal role in various biomedical
research domains. Concurrently, term clustering emerges as a crucial step in constructing …
research domains. Concurrently, term clustering emerges as a crucial step in constructing …
Multi-Source Soft Labeling and Hard Negative Sampling for Retrieval Distractor Ranking
Multiple-choice questions (MCQs) are a kind of widely adopted approaches in learning
assessment. Recently, the automatic generation of MCQs has become a popular research …
assessment. Recently, the automatic generation of MCQs has become a popular research …
Improving dual-encoder training through dynamic indexes for negative mining
Dual encoder models are ubiquitous in modern classification and retrieval. Crucial for
training such dual encoders is an accurate estimation of gradients from the partition function …
training such dual encoders is an accurate estimation of gradients from the partition function …
BELHD: improving biomedical entity linking with homonym disambiguation
S Garda, U Leser - Bioinformatics, 2024 - academic.oup.com
Motivation Biomedical entity linking (BEL) is the task of grounding entity mentions to a given
knowledge base (KB). Recently, neural name-based methods, system identifying the most …
knowledge base (KB). Recently, neural name-based methods, system identifying the most …
BioPRO: Context-Infused Prompt Learning for Biomedical Entity Linking
Recent research tends to address the biomedical entity linking problem in a unified
framework solely based on surface form matching between mentions and entities …
framework solely based on surface form matching between mentions and entities …