Beyond the “Code”: a guide to the description and documentation of biodiversity in ciliated protists (Alveolata, Ciliophora)

A Warren, DJ Patterson, M Dunthorn… - Journal of eukaryotic …, 2017 - Wiley Online Library
Recent advances in molecular technology have revolutionized research on all aspects of the
biology of organisms, including ciliates, and created unprecedented opportunities for …

Genome characterisation of the genus Francisella reveals insight into similar evolutionary paths in pathogens of mammals and fish

A Sjödin, K Svensson, C Öhrman, J Ahlinder… - BMC genomics, 2012 - Springer
Background Prior to this study, relatively few strains of Francisella had been genome-
sequenced. Previously published Francisella genome sequences were largely restricted to …

Launching insectphylo. org; a new hub facilitating construction and use of synthesis molecular phylogenies of insects

D Chesters, RR Ferrari, X Lin, MC Orr… - Molecular Ecology …, 2023 - Wiley Online Library
Abstract The Holy Grail of an Insect Tree of Life can only be 'discovered'through extensive
collaboration among taxon specialists, phylogeneticists and centralized frameworks such as …

Where are the biggest gaps in phylogenetic coverage of insect diversity?

D Chesters - Systematic Entomology, 2025 - Wiley Online Library
Gaps in phylogenetic knowledge are unlikely to be filled in an optimal manner in the
absence of a quantitative descriptive framework of phylogenetic coverage to date and a …

Evolution and dynamics of megaplasmids with genome sizes larger than 100 kb in the Bacillus cereus group

J Zheng, D Peng, L Ruan, M Sun - BMC evolutionary biology, 2013 - Springer
Background Plasmids play a crucial role in the evolution of bacterial genomes by mediating
horizontal gene transfer. However, the origin and evolution of most plasmids remains …

Diversity of Streptomyces spp. in Eastern Himalayan region–computational RNomics approach to phylogeny

K Bhattacharjee, S Banerjee, SR Joshi - Bioinformation, 2012 - pmc.ncbi.nlm.nih.gov
Isolation and characterization of actinomycetes from soil samples from altitudinal gradient of
North-East India were investigated for computational RNomics based phylogeny. A total of …

A tale of two drug targets: the evolutionary history of BACE1 and BACE2

C Southan, JM Hancock - Frontiers in Genetics, 2013 - frontiersin.org
The beta amyloid (APP) cleaving enzyme (BACE1) has been a drug target for Alzheimer's
Disease (AD) since 1999 with lead inhibitors now entering clinical trials. In 2011, the …

A compendium of transcription factor and Transcriptionally active protein coding gene families in cowpea (Vigna unguiculata L.)

VA Misra, Y Wang, MP Timko - BMC genomics, 2017 - Springer
Abstract Background Cowpea (Vigna unguiculata (L.) Walp.) is the most important food and
forage legume in the semi-arid tropics of sub-Saharan Africa where approximately 80% of …

TreeBASEdmp: A toolkit for Phyloinformatic research

WH Piel, RA Vos - bioRxiv, 2018 - biorxiv.org
Over the last 20 years, TreeBASE has acquired a substantial body of phylogenetic data,
including more than 20,000 published phylogenies. Given latency issues and limited options …

EVOLUTIONARY BIOINFORMATICS

H MAHESHWARI - Omics Applications and Avenues, 2024 - books.google.com
Phylogenetics is one of the most important and best tools in many fields. For example, it is
essential to understand the spreading of contagious diseases, such as the origin of Human …