Recent advances in variational autoencoders with representation learning for biomedical informatics: A survey
Variational autoencoders (VAEs) are deep latent space generative models that have been
immensely successful in multiple exciting applications in biomedical informatics such as …
immensely successful in multiple exciting applications in biomedical informatics such as …
Benchmarking machine learning models for polymer informatics: an example of glass transition temperature
In the field of polymer informatics, utilizing machine learning (ML) techniques to evaluate the
glass transition temperature T g and other properties of polymers has attracted extensive …
glass transition temperature T g and other properties of polymers has attracted extensive …
Designing molecules with autoencoder networks
A Ilnicka, G Schneider - Nature Computational Science, 2023 - nature.com
Autoencoders are versatile tools in molecular informatics. These unsupervised neural
networks serve diverse tasks such as data-driven molecular representation and constructive …
networks serve diverse tasks such as data-driven molecular representation and constructive …
Predicting polymers' glass transition temperature by a chemical language processing model
We propose a chemical language processing model to predict polymers' glass transition
temperature (T g) through a polymer language (SMILES, Simplified Molecular Input Line …
temperature (T g) through a polymer language (SMILES, Simplified Molecular Input Line …
Multi-objective drug design based on graph-fragment molecular representation and deep evolutionary learning
M Mukaidaisi, A Vu, K Grantham… - Frontiers in …, 2022 - frontiersin.org
Drug discovery is a challenging process with a huge molecular space to be explored and
numerous pharmacological properties to be appropriately considered. Among various drug …
numerous pharmacological properties to be appropriately considered. Among various drug …
Deep evolutionary learning for molecular design
K Grantham, M Mukaidaisi, HK Ooi… - IEEE Computational …, 2022 - ieeexplore.ieee.org
In this paper, a prototypical deep evolutionary learning (DEL) process is proposed to
integrate deep generative model and multi-objective evolutionary computation for molecular …
integrate deep generative model and multi-objective evolutionary computation for molecular …
Assessing deep generative models in chemical composition space
H Türk, E Landini, C Kunkel, JT Margraf… - Chemistry of …, 2022 - ACS Publications
The computational discovery of novel materials has been one of the main motivations
behind research in theoretical chemistry for several decades. Despite much effort, this is far …
behind research in theoretical chemistry for several decades. Despite much effort, this is far …
NRC-VABS: Normalized Reparameterized Conditional Variational Autoencoder with applied beam search in latent space for drug molecule design
Designing an optimal and desired drug molecule structure is a challenging problem. Most of
the existing solutions/representations reported in the literature for this problem are complex …
the existing solutions/representations reported in the literature for this problem are complex …
VAE-Sim: a novel molecular similarity measure based on a variational autoencoder
Molecular similarity is an elusive but core “unsupervised” cheminformatics concept, yet
different “fingerprint” encodings of molecular structures return very different similarity values …
different “fingerprint” encodings of molecular structures return very different similarity values …
[HTML][HTML] Exploring the chemical space of ionic liquids for CO2 dissolution through generative machine learning models
For discovering uncharted chemical space of ionic liquids (ILs) for CO 2 dissolution, a
reliable generative framework combining re-balanced variational autoencoder (VAE) …
reliable generative framework combining re-balanced variational autoencoder (VAE) …