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Regulation, functions and transmission of bivalent chromatin during mammalian development
TA Macrae, J Fothergill-Robinson… - … reviews Molecular cell …, 2023 - nature.com
Cells differentiate and progress through development guided by a dynamic chromatin
landscape that mediates gene expression programmes. During development, mammalian …
landscape that mediates gene expression programmes. During development, mammalian …
RNA sequencing: the teenage years
Over the past decade, RNA sequencing (RNA-seq) has become an indispensable tool for
transcriptome-wide analysis of differential gene expression and differential splicing of …
transcriptome-wide analysis of differential gene expression and differential splicing of …
Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward
Vast global declines of freshwater and marine fish diversity and population abundance pose
serious threats to both ecosystem sustainability and human livelihoods. Environmental DNA …
serious threats to both ecosystem sustainability and human livelihoods. Environmental DNA …
Improved CUT&RUN chromatin profiling tools
Previously, we described a novel alternative to chromatin immunoprecipitation, CUT&RUN,
in which unfixed permeabilized cells are incubated with antibody, followed by binding of a …
in which unfixed permeabilized cells are incubated with antibody, followed by binding of a …
Targeted in situ genome-wide profiling with high efficiency for low cell numbers
Cleavage under targets and release using nuclease (CUT&RUN) is an epigenomic profiling
strategy in which antibody-targeted controlled cleavage by micrococcal nuclease releases …
strategy in which antibody-targeted controlled cleavage by micrococcal nuclease releases …
An efficient targeted nuclease strategy for high-resolution map** of DNA binding sites
We describe Cleavage Under Targets and Release Using Nuclease (CUT&RUN), a
chromatin profiling strategy in which antibody-targeted controlled cleavage by micrococcal …
chromatin profiling strategy in which antibody-targeted controlled cleavage by micrococcal …
Epigenetics and aging
S Pal, JK Tyler - Science advances, 2016 - science.org
Over the past decade, a growing number of studies have revealed that progressive changes
to epigenetic information accompany aging in both dividing and nondividing cells …
to epigenetic information accompany aging in both dividing and nondividing cells …
[HTML][HTML] Transcriptome-wide measurement of translation by ribosome profiling
NJ McGlincy, NT Ingolia - Methods, 2017 - Elsevier
Translation is one of the fundamental processes of life. It comprises the assembly of
polypeptides whose amino acid sequence corresponds to the codon sequence of an …
polypeptides whose amino acid sequence corresponds to the codon sequence of an …
Nuclear mechanosensing drives chromatin remodelling in persistently activated fibroblasts
Fibrotic disease is caused by the continuous deposition of extracellular matrix by persistently
activated fibroblasts (also known as myofibroblasts), even after the resolution of the injury …
activated fibroblasts (also known as myofibroblasts), even after the resolution of the injury …
Polyploidy, the nucleotype, and novelty: the impact of genome doubling on the biology of the cell
Polyploidy is a key mechanism of genome evolution and speciation, particularly in plants.
Many aspects of polyploidy have been elucidated with the tools that have become available …
Many aspects of polyploidy have been elucidated with the tools that have become available …