A survey on subgraph counting: concepts, algorithms, and applications to network motifs and graphlets

P Ribeiro, P Paredes, MEP Silva, D Aparicio… - ACM computing surveys …, 2021 - dl.acm.org
Computing subgraph frequencies is a fundamental task that lies at the core of several
network analysis methodologies, such as network motifs and graphlet-based metrics, which …

Input-output networks considering graphlet-based analysis for production optimization: Application in ethylene plants

Z Wang, Y Han, C Li, Z Geng, J Fan - Journal of Cleaner Production, 2021 - Elsevier
Complex systems and massive amounts of data present a huge challenge for modern
chemical enterprises, but traditional data statistical analysis and data mining methods have …

A review of graph-based models for entity-oriented search

J Devezas, S Nunes - SN Computer Science, 2021 - Springer
Entity-oriented search tasks heavily rely on exploiting unstructured and structured
collections. Moreover, it is frequent for text corpora and knowledge bases to provide …

Temporal network alignment via GoT-WAVE

D Aparício, P Ribeiro, T Milenković, F Silva - Bioinformatics, 2019 - academic.oup.com
Motivation Network alignment (NA) finds conserved regions between two networks. NA
methods optimize node conservation (NC) and edge conservation. Dynamic graphlet …

Supervised prediction of aging-related genes from a context-specific protein interaction subnetwork

Q Li, T Milenković - IEEE/ACM transactions on computational …, 2021 - ieeexplore.ieee.org
Human aging is linked to many prevalent diseases. The aging process is highly influenced
by genetic factors. Hence, it is important to identify human aging-related genes. We focus on …

The power of dynamic social networks to predict individuals' mental health

S Liu, D Hachen, O Lizardo, C Poellabauer… - PACIFIC …, 2019 - World Scientific
Precision medicine has received attention both in and outside the clinic. We focus on the
latter, by exploiting the relationship between individuals' social interactions and their mental …

Multi‐layer sequential network analysis improves protein 3D structural classification

K Newaz, J Piland, PL Clark, SJ Emrich… - Proteins: Structure …, 2022 - Wiley Online Library
Protein structural classification (PSC) is a supervised problem of assigning proteins into pre‐
defined structural (eg, CATH or SCOPe) classes based on the proteins' sequence or 3D …

Improved supervised prediction of aging-related genes via weighted dynamic network analysis

Q Li, K Newaz, T Milenković - BMC bioinformatics, 2021 - Springer
Background This study focuses on the task of supervised prediction of aging-related genes
from-omics data. Unlike gene expression methods for this task that capture aging-specific …

CAGE: Cache-Aware Graphlet Enumeration

A Conte, R Grossi, D Rucci - International Symposium on String …, 2023 - Springer
When information is (implicitly or explicitly) linked in its own nature, and is modeled as a
network, retrieving patterns can benefit from this linked structure. In networks,“graphlets” …

Graphlets over time: A new lens for temporal network analysis

D Yoon, D Lee, M Choe, K Shin - arxiv preprint arxiv:2301.00310, 2023 - arxiv.org
Graphs are widely used for modeling various types of interactions, such as email
communications and online discussions. Many of such real-world graphs are temporal, and …