CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods

Genome biology, 2024 - Springer
Abstract Background The Critical Assessment of Genome Interpretation (CAGI) aims to
advance the state-of-the-art for computational prediction of genetic variant impact …

Genome interpretation using in silico predictors of variant impact

P Katsonis, K Wilhelm, A Williams, O Lichtarge - Human genetics, 2022 - Springer
Estimating the effects of variants found in disease driver genes opens the door to
personalized therapeutic opportunities. Clinical associations and laboratory experiments …

Updated benchmarking of variant effect predictors using deep mutational scanning

BJ Livesey, JA Marsh - Molecular systems biology, 2023 - embopress.org
The assessment of variant effect predictor (VEP) performance is fraught with biases
introduced by benchmarking against clinical observations. In this study, building on our …

A clinical-genetic risk score for predicting cancer-associated venous thromboembolism: a development and validation study involving two independent prospective …

A Muñoz, C Ay, E Grilz, S López, C Font… - Journal of Clinical …, 2023 - ascopubs.org
PURPOSE Venous thromboembolism (VTE) is a leading cause of death among patients with
cancer. The Khorana score was developed for assessing the risk of VTE in outpatients with …

Reports from the fifth edition of CAGI: The Critical Assessment of Genome Interpretation

G Andreoletti, LR Pal, J Moult, SE Brenner - Human mutation, 2019 - Wiley Online Library
Abstract Interpretation of genomic variation plays an essential role in the analysis of cancer
and monogenic disease, and increasingly also in complex trait disease, with applications …

CAGI5: Objective performance assessments of predictions based on the Evolutionary Action equation

P Katsonis, O Lichtarge - Human mutation, 2019 - Wiley Online Library
Many computational approaches estimate the effect of coding variants, but their predictions
often disagree with each other. These contradictions confound users and raise questions …

[HTML][HTML] An artificial neural network approach and a data augmentation algorithm to systematize the diagnosis of deep-vein thrombosis by using wells' criteria

MB Fong-Mata, EE García-Guerrero, DA Mejía-Medina… - Electronics, 2020 - mdpi.com
The use of a back-propagation artificial neural network (ANN) to systematize the reliability of
a Deep Vein Thrombosis (DVT) diagnostic by using Wells' criteria is introduced herein. In …

Critical assessment of genome interpretation consortium. CAGI, the critical assessment of genome interpretation, establishes progress and pprospects for …

S Jain, C Bakolitsa, EB Steven, P Radivojac… - Genome …, 2024 - iris.uniroma1.it
Background: The Critical Assessment of Genome Interpretation (CAGI) aims to advance the
state-of-the-art for computational prediction of genetic variant impact, particularly where …

Deep vein thrombosis detection via combination of neural networks

R Arun, BK Muthu, A Ahilan - Biomedical Signal Processing and Control, 2025 - Elsevier
Abstract Deep Vein Thrombosis (DVT) is the result of blood clots in the veins of the body
especially in the legs. The most catastrophic importance of DVT is pulmonary embolism …

New approaches to predict the effect of co-occurring variants on protein characteristics

D Holcomb, N Hamasaki-Katagiri, K Laurie… - The American Journal of …, 2021 - cell.com
Predicting the effect of a mutated gene before the onset of symptoms of genetic diseases
would greatly facilitate diagnosis and potentiate early intervention. There have been myriad …