Discovery and verification of functional single nucleotide polymorphisms in regulatory genomic regions: current and develo** technologies

BN Chorley, X Wang, MR Campbell, GS Pittman… - … Research/Reviews in …, 2008 - Elsevier
The most common form of genetic variation, single nucleotide polymorphisms or SNPs, can
affect the way an individual responds to the environment and modify disease risk. Although …

AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors

H Hu, YR Miao, LH Jia, QY Yu, Q Zhang… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Animal Transcription Factor DataBase (AnimalTFDB) is a resource aimed to
provide the most comprehensive and accurate information for animal transcription factors …

Single nucleotide polymorphism in transcriptional regulatory regions and expression of environmentally responsive genes

X Wang, DJ Tomso, X Liu, DA Bell - Toxicology and applied pharmacology, 2005 - Elsevier
Single nucleotide polymorphisms (SNPs) in the human genome are DNA sequence
variations that can alter an individual's response to environmental exposure. SNPs in gene …

Landscape of allele-specific transcription factor binding in the human genome

S Abramov, A Boytsov, D Bykova, DD Penzar… - Nature …, 2021 - nature.com
Sequence variants in gene regulatory regions alter gene expression and contribute to
phenotypes of individual cells and the whole organism, including disease susceptibility and …

A 14-bp functional deletion within the CMTM2 gene is significantly associated with litter size in goat

Z Kang, S Zhang, L He, H Zhu, Z Wang, H Yan… - Theriogenology, 2019 - Elsevier
CKLF-like MARVEL transmembrane domain-containing 2 (CMTM2) plays an important role
in animal reproduction, and abnormal CMTM2 expression leads to spermatogenesis …

Macrophage-derived cytokines in pneumonia: linking cellular immunology and genetics

M Dukhinova, E Kokinos, P Kuchur… - Cytokine & Growth …, 2021 - Elsevier
Macrophages represent the first line of anti-pathogen defense-they encounter invading
pathogens to perform the phagocytic activity, to deliver the plethora of pro-and anti …

Genetic alterations affecting the genes encoding the enzymes of the kynurenine pathway and their association with human diseases

FA Boros, Z Bohár, L Vécsei - Mutation Research/Reviews in Mutation …, 2018 - Elsevier
Tryptophan is metabolized primarily via the kynurenine pathway (KP), which involves
several enzymes, including indoleamine 2, 3-dioxygenase, tryptophan 2, 3 dioxygenase …

Association of breast cancer resistance protein/ABCG2 phenotypes and novel promoter and intron 1 single nucleotide polymorphisms

B Poonkuzhali, J Lamba, S Strom… - Drug metabolism and …, 2008 - Elsevier
The hypothesis was tested that sequence diversity in breast cancer resistance protein
(BCRP)'s cis-regulatory region is a significant determinant of BCRP expression. The BCRP …

How to Use SNP_TATA_Comparator to Find a Significant Change in Gene Expression Caused by the Regulatory SNP of This Gene's Promoter via a Change in …

M Ponomarenko, D Rasskazov… - BioMed Research …, 2015 - Wiley Online Library
The use of biomedical SNP markers of diseases can improve effectiveness of treatment.
Genoty** of patients with subsequent searching for SNPs more frequent than in norm is …

Detection of regulatory SNPs in human genome using ChIP-seq ENCODE data

LO Bryzgalov, EV Antontseva, MY Matveeva… - PLoS one, 2013 - journals.plos.org
A vast amount of SNPs derived from genome-wide association studies are represented by
non-coding ones, therefore exacerbating the need for effective identification of regulatory …