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Minimum information about an uncultivated virus genome (MIUViG)
We present an extension of the Minimum Information about any (x) Sequence (MIxS)
standard for reporting sequences of uncultivated virus genomes. Minimum Information about …
standard for reporting sequences of uncultivated virus genomes. Minimum Information about …
Metabolic and biogeochemical consequences of viral infection in aquatic ecosystems
Ecosystems are controlled by 'bottom-up'(resources) and 'top-down'(predation) forces. Viral
infection is now recognized as a ubiquitous top-down control of microbial growth across …
infection is now recognized as a ubiquitous top-down control of microbial growth across …
[HTML][HTML] The gut virome database reveals age-dependent patterns of virome diversity in the human gut
The gut microbiome profoundly affects human health and disease, and their infecting viruses
are likely as important, but often missed because of reference database limitations. Here, we …
are likely as important, but often missed because of reference database limitations. Here, we …
[HTML][HTML] Marine DNA viral macro-and microdiversity from pole to pole
Microbes drive most ecosystems and are modulated by viruses that impact their lifespan,
gene flow, and metabolic outputs. However, ecosystem-level impacts of viral community …
gene flow, and metabolic outputs. However, ecosystem-level impacts of viral community …
Virus taxonomy in the age of metagenomics
The number and diversity of viral sequences that are identified in metagenomic data far
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …
[HTML][HTML] Anvi'o: an advanced analysis and visualization platform for 'omics data
Advances in high-throughput sequencing and 'omics technologies are revolutionizing
studies of naturally occurring microbial communities. Comprehensive investigations of …
studies of naturally occurring microbial communities. Comprehensive investigations of …
Lytic to temperate switching of viral communities
Microbial viruses can control host abundances via density-dependent lytic predator–prey
dynamics. Less clear is how temperate viruses, which coexist and replicate with their host …
dynamics. Less clear is how temperate viruses, which coexist and replicate with their host …
Sequence depth, not PCR replication, improves ecological inference from next generation DNA sequencing
DP Smith, KG Peay - PloS one, 2014 - journals.plos.org
Recent advances in molecular approaches and DNA sequencing have greatly progressed
the field of ecology and allowed for the study of complex communities in unprecedented …
the field of ecology and allowed for the study of complex communities in unprecedented …
Next‐generation sequencing technologies for environmental DNA research
Since 2005, advances in next‐generation sequencing technologies have revolutionized
biological science. The analysis of environmental DNA through the use of specific gene …
biological science. The analysis of environmental DNA through the use of specific gene …
Metagenomics-a guide from sampling to data analysis
Metagenomics applies a suite of genomic technologies and bioinformatics tools to directly
access the genetic content of entire communities of organisms. The field of metagenomics …
access the genetic content of entire communities of organisms. The field of metagenomics …