Deep learning as a tool for ecology and evolution

ML Borowiec, RB Dikow, PB Frandsen… - Methods in Ecology …, 2022 - Wiley Online Library
Deep learning is driving recent advances behind many everyday technologies, including
speech and image recognition, natural language processing and autonomous driving. It is …

The emerging phylogenetic perspective on the evolution of actinopterygian fishes

A Dornburg, TJ Near - Annual Review of Ecology, Evolution …, 2021 - annualreviews.org
The emergence of a new phylogeny of ray-finned fishes at the turn of the twenty-first century
marked a paradigm shift in understanding the evolutionary history of half of living …

Atlas of Brazilian snakes: verified point-locality maps to mitigate the Wallacean shortfall in a megadiverse snake fauna

CC Nogueira, AJS Argôlo, V Arzamendia… - South American Journal …, 2019 - BioOne
Accurate and detailed species distribution maps are fundamental for documenting and
interpreting biological diversity. For snakes, an ecologically diverse group of reptiles …

[PDF][PDF] Phylogenomics reveals ancient gene tree discordance in the amphibian tree of life

PM Hime, AR Lemmon, ECM Lemmon… - Systematic …, 2021 - academic.oup.com
Molecular phylogenies have yielded strong support for many parts of the amphibian Tree of
Life, but poor support for the resolution of deeper nodes, including relationships among …

The macroevolutionary singularity of snakes

PO Title, S Singhal, MC Grundler, GC Costa, RA Pyron… - Science, 2024 - science.org
Snakes and lizards (Squamata) represent a third of terrestrial vertebrates and exhibit
spectacular innovations in locomotion, feeding, and sensory processing. However, the …

The updated checklists of amphibians and reptiles of China

K Wang, J Ren, H Chen, Z Lyu, X Guo… - Biodiversity …, 2020 - biodiversity-science.net
We updated the checklists of extant, native amphibians and reptiles of China based on the
previously published checklist of reptiles in 2015, the online checklist of amphibians on the …

Phylogenomic subsampling and the search for phylogenetically reliable loci

N Mongiardino Koch - Molecular Biology and Evolution, 2021 - academic.oup.com
Phylogenomic subsampling is a procedure by which small sets of loci are selected from
large genome-scale data sets and used for phylogenetic inference. This step is often …

SquamBase—A database of squamate (Reptilia: Squamata) traits

S Meiri - Global Ecology and Biogeography, 2024 - Wiley Online Library
Motivation I present a database that contains information on multiple key traits for all 11,744
recognised species of squamates worldwide. The database encompasses key traits and a …

Large-scale snake genome analyses provide insights into vertebrate development

C Peng, DD Wu, JL Ren, ZL Peng, Z Ma, W Wu, Y Lv… - Cell, 2023 - cell.com
Snakes are a remarkable squamate lineage with unique morphological adaptations,
especially those related to the evolution of vertebrate skeletons, organs, and sensory …

Ancient demographics determine the effectiveness of genetic purging in endangered lizards

HX **e, XX Liang, ZQ Chen, WM Li… - Molecular biology …, 2022 - academic.oup.com
The purging of deleterious alleles has been hypothesized to mitigate inbreeding depression,
but its effectiveness in endangered species remains debatable. To understand how …