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Site-specific dual encoding and labeling of proteins via genetic code expansion
The ability to selectively modify proteins at two or more defined locations opens new
avenues for manipulating, engineering, and studying living systems. As a chemical biology …
avenues for manipulating, engineering, and studying living systems. As a chemical biology …
Nanopores: a versatile tool to study protein dynamics
Proteins are the active workhorses in our body. These biomolecules perform all vital cellular
functions from DNA replication and general biosynthesis to metabolic signaling and …
functions from DNA replication and general biosynthesis to metabolic signaling and …
Bayesian reweighting of biomolecular structural ensembles using heterogeneous cryo-EM maps with the cryoENsemble method
Cryogenic electron microscopy (cryo-EM) has emerged as a powerful method for the
determination of structures of complex biological molecules. The accurate characterisation …
determination of structures of complex biological molecules. The accurate characterisation …
Fluorescence nanoscopy at the sub-10 nm scale
Fluorescence nanoscopy represented a breakthrough for the life sciences as it delivers 20–
30 nm resolution using far-field fluorescence microscopes. This resolution limit is not …
30 nm resolution using far-field fluorescence microscopes. This resolution limit is not …
[HTML][HTML] Stability of ligand-induced protein conformation influences affinity in maltose-binding protein
Our understanding of what determines ligand affinity of proteins is poor, even with high-
resolution structures available. Both the non-covalent ligand–protein interactions and the …
resolution structures available. Both the non-covalent ligand–protein interactions and the …
Integrating single-molecule FRET and biomolecular simulations to study diverse interactions between nucleic acids and proteins
JC Sanders, ED Holmstrom - Essays in biochemistry, 2021 - portlandpress.com
The conformations of biological macromolecules are intimately related to their cellular
functions. Conveniently, the well-characterized dipole–dipole distance-dependence of …
functions. Conveniently, the well-characterized dipole–dipole distance-dependence of …
Identification and quantification of within-burst dynamics in singly labeled single-molecule fluorescence lifetime experiments
PD Harris, E Lerner - Biophysical reports, 2022 - cell.com
Single-molecule spectroscopy has revolutionized molecular biophysics and provided means
to probe how structural moieties within biomolecules spatially reorganize at different …
to probe how structural moieties within biomolecules spatially reorganize at different …
Evidence for a compact σ70 conformation in vitro and in vivo
The initiation of transcription in Escherichia coli (E. coli) is facilitated by promoter specificity
factors, also known as σ factors, which may bind a promoter only as part of a complex with …
factors, also known as σ factors, which may bind a promoter only as part of a complex with …
Structural and biophysical characterization of the tandem substrate-binding domains of the ABC importer GlnPQ
The ATP-binding cassette transporter GlnPQ is an essential uptake system that transports
glutamine, glutamic acid and asparagine in Gram-positive bacteria. It features two extra …
glutamine, glutamic acid and asparagine in Gram-positive bacteria. It features two extra …
From folding to function: complex macromolecular reactions unraveled one-by-one with optical tweezers
PO Heidarsson, C Cecconi - Essays in Biochemistry, 2021 - portlandpress.com
Single-molecule manipulation with optical tweezers has uncovered macromolecular
behaviour hidden to other experimental techniques. Recent instrumental improvements …
behaviour hidden to other experimental techniques. Recent instrumental improvements …