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Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases
The identification of interactions between drugs/compounds and their targets is crucial for
the development of new drugs. In vitro screening experiments (ie bioassays) are frequently …
the development of new drugs. In vitro screening experiments (ie bioassays) are frequently …
Deep learning in virtual screening: recent applications and developments
Drug discovery is a cost and time-intensive process that is often assisted by computational
methods, such as virtual screening, to speed up and guide the design of new compounds …
methods, such as virtual screening, to speed up and guide the design of new compounds …
Interpretable bilinear attention network with domain adaptation improves drug–target prediction
Predicting drug–target interaction is key for drug discovery. Recent deep learning-based
methods show promising performance, but two challenges remain: how to explicitly model …
methods show promising performance, but two challenges remain: how to explicitly model …
GraphDTA: predicting drug–target binding affinity with graph neural networks
The development of new drugs is costly, time consuming and often accompanied with safety
issues. Drug repurposing can avoid the expensive and lengthy process of drug development …
issues. Drug repurposing can avoid the expensive and lengthy process of drug development …
MolTrans: molecular interaction transformer for drug–target interaction prediction
Motivation Drug–target interaction (DTI) prediction is a foundational task for in-silico drug
discovery, which is costly and time-consuming due to the need of experimental search over …
discovery, which is costly and time-consuming due to the need of experimental search over …
Biot5: Enriching cross-modal integration in biology with chemical knowledge and natural language associations
Recent advancements in biological research leverage the integration of molecules, proteins,
and natural language to enhance drug discovery. However, current models exhibit several …
and natural language to enhance drug discovery. However, current models exhibit several …
iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences
Structural and physiochemical descriptors extracted from sequence data have been widely
used to represent sequences and predict structural, functional, expression and interaction …
used to represent sequences and predict structural, functional, expression and interaction …
Deep-learning-based drug–target interaction prediction
Identifying interactions between known drugs and targets is a major challenge in drug
repositioning. In silico prediction of drug–target interaction (DTI) can speed up the expensive …
repositioning. In silico prediction of drug–target interaction (DTI) can speed up the expensive …
Machine intelligence in peptide therapeutics: A next‐generation tool for rapid disease screening
Discovery and development of biopeptides are time‐consuming, laborious, and dependent
on various factors. Data‐driven computational methods, especially machine learning (ML) …
on various factors. Data‐driven computational methods, especially machine learning (ML) …
iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data
With the explosive growth of biological sequences generated in the post-genomic era, one
of the most challenging problems in bioinformatics and computational biology is to …
of the most challenging problems in bioinformatics and computational biology is to …